Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02282 ATGCCGTCTGTCTATGGAGACCGTTTGACCACTTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTTTTACGTACTCGTAAACCTCTGTCAGTGGAGTTAGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTAAAAACAATTGCAAAGAGATCGGGAGATGTCTACATTCCTCGTGGTGTTGCTGTGCCGGCACTGGACAAAGACACACTCTGGGATTTTCAACCCACAAAGATAGGTGAGGGCGACTTATTGACAGGTGGAGACTTGTATGCTACTGTCTTCGAGAATAGTCTAATGGAGCACCGCATTGCACTTCCTCCTGAAGCTATGGGAAAAGTTACCTATATTGCAGCACCCGGTCAATATTCATTGAAGGATACTGTTCTAGAGCTCGAGTTTCAAGGAGTTAGAAAGCAATTTACCATGCTTCAGACTTGGCCCGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACTGGACAGCGTGTTCTTGATGCACTCTTCCCTTCTGTTCTTGGTGGAACATGTGCCATTCCTGGAGCGTTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATACTCCAATTCTGATACTGTGGTATATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGATGGTCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTAGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCGATTTATACGGGAATTACTTTGGCCGAGTACTTCAGAGATATGGGATACAATGTAAGTATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGATTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCTTACCTAGCAGCACGTTTAGCCTCCTTCTATGAGCGTGCTGGTAAAGTGAAATGTCTCGGTGGGCCAGAACGAACTGGCAGTGTTACTATTGTCGGTGCAGTTTCTCCACCTGGAGGAGATTTCTCTGATCCGGTTACATCTGCTACTCTCAGTATTGTCCAGGTCTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCTGTGAACTGGCTAATTTCATACTCAAAATACTCCTCTGCTTTGGAGTCTTTCTACGAGAAGTTTGATCCAGATTTTATTAGCATCAGGACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGGAAAGACGCCTTAGCCGAAGGAGATAAGATCACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTACGATAAATTCTGCCCATTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTTCAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACACTTTGATTAAGCATCGGTTGGGAGATCTTTTCTATCGCCTCGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAACCAGCTCTCATCGAAAAATTCAAGAAGCTACATGAAGATCTGACCAACGGTTTCCGTGCTCTCGAGGACGAAACTCGATAG 1872 45.19 MPSVYGDRLTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTRKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDTLWDFQPTKIGEGDLLTGGDLYATVFENSLMEHRIALPPEAMGKVTYIAAPGQYSLKDTVLELEFQGVRKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFISIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFFNLANQAVERGAGMDGQKITYTLIKHRLGDLFYRLVSQKFEDPAEGEPALIEKFKKLHEDLTNGFRALEDETR* 624
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
7 21243676 21249998 + CsaV3_7G033710.1 Csa07g02282 537845

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02282 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Csa07g02282 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034|GO:0046961
Csa07g02282 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034|GO:1902600
Csa07g02282 623 Gene3D - 91 457 IPR027417 -
Csa07g02282 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524
Csa07g02282 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524
Csa07g02282 623 Coils Coil 601 621 - -
Csa07g02282 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 IPR022878 GO:0046034|GO:0046961
Csa07g02282 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 463 IPR027417 -
Csa07g02282 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Csa07g02282 623 Gene3D - 134 205 - -
Csa07g02282 623 Gene3D - 459 612 IPR024034 -
Csa07g02282 623 TIGRFAM V-ATPase_V1_A: V-type ATPase, A subunit 20 611 IPR005725 GO:0033180|GO:0046961|GO:1902600
Csa07g02282 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Csa07g02282 623 Gene3D - 20 89 IPR023366 -
Csa07g02282 623 CDD V_A-ATPase_A 88 460 - -
Csa07g02282 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 3 622 - -
Csa07g02282 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Csa07g02282 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034|GO:1902600
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02282 K02145 ATPeV1A, ATP6A; V-type H+-transporting ATPase subunit A [EC:7.1.2.2] - csv:101216234 1242.25
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01419 Csa-Chr5:15278629 Csa07g02282 Csa-Chr7:21243676 9.52E-11 dispersed
Csa07g00121 Csa-Chr7:1064569 Csa07g02282 Csa-Chr7:21243676 1.46E-21 dispersed
Csa07g02282 Csa-Chr7:21243676 Csa05g02662 Csa-Chr5:27603965 1.29E-26 transposed
Csa07g02282 Csa-Chr7:21243676 Csa05g02046 Csa-Chr5:23779944 1.20E-26 transposed
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa02g01881 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1619.0
Csa06g01652 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.2
Csa02g02102 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.3 1.0e-295 1012.7
Csa07g00020 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.4 1.4e-295 1012.3
Csa07g00020 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1229.9
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1204.9
Csa06g01652 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.1 6.6e-298 1020.0
Csa07g00020 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.3
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1199.9
Csa06g01652 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G34720 100.0 4.5e-61 230.7
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa03g01099 . 2 166 Primary Pumps ATPases(2) AT1G75630 81.4 2.7e-67 251.9
Csa02g02112 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa02g02113 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa03g01099 . 3 166 Primary Pumps ATPases(2) AT2G16510 99.4 5.4e-74 273.9
Csa02g02112 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 9.2e-74 273.1
Csa02g02113 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
Csa02g02112 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
Csa02g02113 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g01099 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g04355 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Csa02g02355 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.8e-70 261.5
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.3e-60 229.2
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa03g04355 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Csa02g02355 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.4e-71 266.2
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1665.6
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1667.5
Csa02g01881 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1619.0
Csa01g02374 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1312.0
Csa01g03136 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Csa07g00121 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.4e-268 921.8
Csa05g01396 . 1 377 Primary Pumps ATPases(2) AT1G12840 83.0 1.8e-181 632.1
Csa06g02409 . 617 878 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Csa03g03694 . 3 455 Primary Pumps ATPases(2) AT3G42050 79.7 3.4e-208 721.1
Csa03g01099 . 3 166 Primary Pumps ATPases(2) AT2G16510 99.4 5.4e-74 273.9
Csa02g02112 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 9.2e-74 273.1
Csa02g02113 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
Csa07g00121 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Csa03g02469 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Csa07g00121 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Csa06g01652 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.2
Csa02g02102 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.3 1.0e-295 1012.7
Csa07g00020 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.4 1.4e-295 1012.3
Csa03g03857 . 1 352 Primary Pumps ATPases(2) AT3G28715 92.0 4.5e-192 667.2
Csa03g02469 . 1 230 Primary Pumps ATPases(2) AT4G11150 76.6 5.7e-90 327.4
Csa07g02282 . 1 624 Primary Pumps ATPases(2) AT1G78900 92.6 0.0e+00 1166.4
Csa07g00121 . 6 489 Primary Pumps ATPases(2) AT1G76030 96.3 1.4e-268 921.8
Csa07g00121 . 1 489 Primary Pumps ATPases(2) AT4G38510 95.5 2.3e-269 924.5
Csa07g00121 . 9 489 Primary Pumps ATPases(2) AT1G20260 96.1 3.0e-266 914.1
Csa05g01396 . 1 377 Primary Pumps ATPases(2) AT1G12840 83.0 1.8e-181 632.1
Csa06g02409 . 617 878 Primary Pumps ATPases(2) AT3G58730 82.1 1.6e-117 419.1
Csa03g02469 . 1 230 Primary Pumps ATPases(2) AT4G11150 76.6 5.7e-90 327.4
Csa03g02469 . 1 223 Primary Pumps ATPases(2) AT3G08560 68.6 1.1e-75 280.0
Csa03g02469 . 1 184 Primary Pumps ATPases(2) AT1G64200 73.3 1.8e-65 245.7
Csa01g03136 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.9 1.2e-57 219.2
Csa03g03694 . 3 455 Primary Pumps ATPases(2) AT3G42050 79.7 3.4e-208 721.1
Csa06g01652 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.5 0.0e+00 1343.2
Csa02g02102 . 1 803 Primary Pumps ATPases(2) AT2G28520 63.3 1.0e-295 1012.7
Csa07g00020 . 10 813 Primary Pumps ATPases(2) AT2G28520 63.4 1.4e-295 1012.3
Csa07g00020 . 6 819 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1229.9
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT2G21410 73.9 0.0e+00 1204.9
Csa06g01652 . 9 820 Primary Pumps ATPases(2) AT2G21410 62.1 6.6e-298 1020.0
Csa07g00020 . 8 819 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1235.3
Csa02g02102 . 1 809 Primary Pumps ATPases(2) AT4G39080 74.7 0.0e+00 1199.9
Csa06g01652 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 5.6e-297 1016.9
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G34720 100.0 4.5e-61 230.7
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G34720 99.3 1.0e-60 229.6
Csa02g02112 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 3.3e-52 201.1
Csa02g02113 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g01099 . 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 4.3e-52 200.7
Csa03g01099 . 28 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.3e-60 229.2
Csa02g02112 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa02g02113 . 28 166 Primary Pumps ATPases(2) AT4G38920 99.3 2.8e-60 228.0
Csa03g01099 . 2 166 Primary Pumps ATPases(2) AT1G75630 81.4 2.7e-67 251.9
Csa02g02112 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa02g02113 . 2 166 Primary Pumps ATPases(2) AT1G75630 80.9 5.9e-67 250.8
Csa03g01099 . 3 166 Primary Pumps ATPases(2) AT2G16510 99.4 5.4e-74 273.9
Csa02g02112 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 9.2e-74 273.1
Csa02g02113 . 3 166 Primary Pumps ATPases(2) AT2G16510 98.8 1.2e-73 272.7
Csa03g04355 . 6 175 Primary Pumps ATPases(2) AT4G32530 77.5 2.0e-73 272.3
Csa02g02355 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.8 1.4e-71 266.2
Csa03g04355 . 1 175 Primary Pumps ATPases(2) AT2G25610 84.0 2.6e-71 265.4
Csa02g02355 . 6 180 Primary Pumps ATPases(2) AT2G25610 85.1 3.8e-70 261.5
Csa03g03857 . 1 352 Primary Pumps ATPases(2) AT3G28710 94.3 3.9e-199 690.6
Csa03g03857 . 1 352 Primary Pumps ATPases(2) AT3G28715 92.0 4.5e-192 667.2
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07810 80.3 0.0e+00 1665.6
Csa01g02374 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.4 0.0e+00 1312.0
Csa02g01881 . 1 998 Primary Pumps ATPases(2) AT1G10130 82.5 0.0e+00 1619.0
Csa01g02374 . 1 1066 Primary Pumps ATPases(2) AT1G07670 80.2 0.0e+00 1667.5
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37