Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Csa07g02285 | ATGGACAGTATTCATCCAAGTGATGGACGGATGCATATCGGCCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAACAGGAACACCATGACTTGCATTATATGAGTAATGGGAATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGTGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGAGAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCTGAAAAGGTACAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCGATCCCAATAACCAATCAGCCAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATTCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATGGCGAGTTGGGAACAAAATGAGAGCTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGTGGACTCATGTGGGCAAACAAGGGAACTCTTCGGGACCTCTCAAAAACTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCGAAAGGTGTTTAG | 912 | 44.74 | MDSIHPSDGRMHIGHAQHSMHTQSVQEQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAMASWEQNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKTPNQGGQTATFNRNENAVQNGDSESNPKGV* | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
7 | 21265420 | 21272076 | - | CsaV3_7G033740.1 | Csa07g02285 | 537848 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Csa07g02285 | 303 | MobiDBLite | consensus disorder prediction | 193 | 224 | - | - | |
Csa07g02285 | 303 | CDD | ZnF_GATA | 231 | 286 | IPR000679 | GO:0006355|GO:0043565 | |
Csa07g02285 | 303 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 290 | IPR045280 | GO:0006355 | |
Csa07g02285 | 303 | SMART | GATA_3 | 225 | 278 | IPR000679 | GO:0006355|GO:0043565 | |
Csa07g02285 | 303 | Pfam | CCT motif | 155 | 197 | IPR010402 | GO:0005515 | |
Csa07g02285 | 303 | ProSiteProfiles | CCT domain profile. | 155 | 197 | IPR010402 | GO:0005515 | |
Csa07g02285 | 303 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 4 | 290 | - | - | |
Csa07g02285 | 303 | ProSiteProfiles | Tify domain profile. | 78 | 113 | IPR010399 | - | |
Csa07g02285 | 303 | SMART | tify_2 | 78 | 113 | IPR010399 | - | |
Csa07g02285 | 303 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 226 | 289 | - | - | |
Csa07g02285 | 303 | Gene3D | - | 221 | 289 | IPR013088 | GO:0006355|GO:0008270 | |
Csa07g02285 | 303 | ProSitePatterns | GATA-type zinc finger domain. | 231 | 258 | IPR000679 | GO:0006355|GO:0043565 | |
Csa07g02285 | 303 | ProSiteProfiles | GATA-type zinc finger domain profile. | 225 | 286 | IPR000679 | GO:0006355|GO:0043565 | |
Csa07g02285 | 303 | Pfam | tify domain | 84 | 112 | IPR010399 | - | |
Csa07g02285 | 303 | MobiDBLite | consensus disorder prediction | 269 | 303 | - | - | |
Csa07g02285 | 303 | Pfam | GATA zinc finger | 231 | 267 | IPR000679 | GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Csa07g00582 | Csa-Chr7:4222943 | Csa07g02285 | Csa-Chr7:21265420 | 3.46E-70 | dispersed | |
Csa07g02285 | Csa-Chr7:21265420 | Csa01g00568 | Csa-Chr1:3658056 | 1.18E-08 | dispersed | |
Csa07g02285 | Csa-Chr7:21265420 | Csa02g02198 | Csa-Chr2:19791788 | 3.51E-72 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32383 | PF06203 | CCT | 8.70E-15 | CL0281 | Csa | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Csa07g02285 | - | - | cmo:103500623 | 615.92 |