Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02285 ATGGACAGTATTCATCCAAGTGATGGACGGATGCATATCGGCCATGCACAGCATTCGATGCACACGCAATCTGTGCAAGAACAGGAACACCATGACTTGCATTATATGAGTAATGGGAATGGATTGGCTGATGAACATGAAAATGAAGGTCATGGTATTATGGTTGTGGAAAGGGAAGTTCAATCGGACCATGGTGATCTTGCTGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGAGAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCTGAAAAGGTACAAGCCGTGTTATTATTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCGATCCCAATAACCAATCAGCCAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATTCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAACGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATTCATGAAGATTCATCATTGGCCATGGCGAGTTGGGAACAAAATGAGAGCTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGTCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGTGGACTCATGTGGGCAAACAAGGGAACTCTTCGGGACCTCTCAAAAACTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCGAAAGGTGTTTAG 912 44.74 MDSIHPSDGRMHIGHAQHSMHTQSVQEQEHHDLHYMSNGNGLADEHENEGHGIMVVEREVQSDHGDLAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQPNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAMASWEQNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKTPNQGGQTATFNRNENAVQNGDSESNPKGV* 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21265420 21272076 - CsaV3_7G033740.1 Csa07g02285 537848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02285 303 MobiDBLite consensus disorder prediction 193 224 - -
Csa07g02285 303 CDD ZnF_GATA 231 286 IPR000679 GO:0006355|GO:0043565
Csa07g02285 303 PANTHER GATA TRANSCRIPTION FACTOR 28 4 290 IPR045280 GO:0006355
Csa07g02285 303 SMART GATA_3 225 278 IPR000679 GO:0006355|GO:0043565
Csa07g02285 303 Pfam CCT motif 155 197 IPR010402 GO:0005515
Csa07g02285 303 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Csa07g02285 303 PANTHER GATA TRANSCRIPTION FACTOR 28 4 290 - -
Csa07g02285 303 ProSiteProfiles Tify domain profile. 78 113 IPR010399 -
Csa07g02285 303 SMART tify_2 78 113 IPR010399 -
Csa07g02285 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 226 289 - -
Csa07g02285 303 Gene3D - 221 289 IPR013088 GO:0006355|GO:0008270
Csa07g02285 303 ProSitePatterns GATA-type zinc finger domain. 231 258 IPR000679 GO:0006355|GO:0043565
Csa07g02285 303 ProSiteProfiles GATA-type zinc finger domain profile. 225 286 IPR000679 GO:0006355|GO:0043565
Csa07g02285 303 Pfam tify domain 84 112 IPR010399 -
Csa07g02285 303 MobiDBLite consensus disorder prediction 269 303 - -
Csa07g02285 303 Pfam GATA zinc finger 231 267 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g00582 Csa-Chr7:4222943 Csa07g02285 Csa-Chr7:21265420 3.46E-70 dispersed
Csa07g02285 Csa-Chr7:21265420 Csa01g00568 Csa-Chr1:3658056 1.18E-08 dispersed
Csa07g02285 Csa-Chr7:21265420 Csa02g02198 Csa-Chr2:19791788 3.51E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32383 PF06203 CCT 8.70E-15 CL0281 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02285 - - cmo:103500623 615.92