Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02304 ATGAAAGAGACCGACGCCATGGAACAACCCATCGCCGCCGGCGCCGGAGTCTCAAACTCGAGCGACCTCCAAAAAACCCAAAAAAGTTCAAAGAAAAAGCTTCTAATCGTAACCCTTTGTTCCACTCTCCTCATCGTCGGTGCCGTCATTGGCATCGTTGCCGGAACAACAAAATCGTCGTCGAAATACTCCGGCGAGTCCCACGCCATTGTGAAGAGCACGTGCAGCAGCACGCTGTATCCGGACATGTGCTATTCTGCAATCTCGAGAAGTGAAGGAGCAATGTTGAAAGTGAAGAATCAAAAGGACGTGATTGAAATTTCGATTAATATTACGGTGAAAGCTGTGGAGGAAAATTACTTTAGAGTGAAGAAACTGTGTGGGTTGAAGAATATTAGTCATAGGGAGAGAATTGCTCTTCACGATTGTCTTGAGACGATTGATGAAACGCTTGACGAACTTCATAAAGCTATTGTGGATCTTAACGAATACCCAAATAAAAAGTCTCTTAACCAACATGCTGATGATCTCAAGACCTTACTTAGTTCCGCTATTACTAATCAGGAAACGTGTCTGGATGGATTCTCCCACGACGATGCGGACAAAAACCTTCGGGACAAGTTGAAAGAGGGGCAAATGGAAGTGGAACACATGTGCAGCAATGCATTAGCCATGATAAAGAACATGACAGACACAGATATAGCCAACTACGAGGCTAAAATGGGAATAACGAAAAATAGAAAACTCATGGCGGAGGAAGACGACAACAATAACGACGACGGAATCCAGTGGCCGGAGTGGCTGTCTGCCGGGGACCGACGACTGCTGCAATCGTCATCCGTGACGCCGAATGTGGTGGTGGCAGCGGACGGTAGTGGAAACTTTCGAACGGTGGCAGCAGCCGTGGCGGCGGCGCCGGTGAGAAGTAGTAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAGAATGTGGAAGTGCCGAAGAAGAAGACGAATATTATGTTTATCGGAGATGGAAGACGGAATACCATAATTACCGGTAGCCGGAATGTGGTCGACGGCAGCACCACTTTCAACTCGGCAACCATGGCTGCGGTTGGTGAAGGATTTCTAGCGCGTGATATCACTTTCCAAAACACCGCCGGTCCATCAAAGCACCAAGCGGTGGCTCTCCGCGTCGGAGCAGATCTCTCAGCCTTTTACCAATGCGATATGTTAGCTTACCAAGACACTCTCTACGTCCATTCCAACCGTCAATTCTACATCAACTGTCTCGTCTCTGGCACAGTCGATTTCATCTTCGGCAACGCCGCTGCCATTTTCCAAGACTGTGACATTCACGCACGCAAACCAAATTCCGGTCAGAAAAACATGGTCACGGCTCAAGGCCGGTCCGACCCGAACCAAAACACCGGTATTGTTATCCAAAAATCACGAATCGGAGCTACGTCGGATCTCCGCCCGGTTCAGAAGAGTTTCCCGACTTTTCTGGGAAGGCCGTGGAAGGAATACTCTAGAACGGTGATTATGCAGTGTACGATTAGCGACGTTATTGACCCGAAGGGATGGCATGAGTGGAGCGGTAGTTTTGCGCTTAACACGTTGTTTTACGGTGAGTATCAAAATACGGGAGCGGGGGCTTCGACTGGAGGGAGGGTGACGTGGAAGGGGTTTAGGGTAATTCGGAGTGCCACGGAGGCGGAAAGTTTTACCGCGGGTAAATTTATTGGCGGTGGGAGTTGGTTGAGCTCTACGGGCTTTCCTTTCTCTTTAGGATTATGA 1788 48.6 MKETDAMEQPIAAGAGVSNSSDLQKTQKSSKKKLLIVTLCSTLLIVGAVIGIVAGTTKSSSKYSGESHAIVKSTCSSTLYPDMCYSAISRSEGAMLKVKNQKDVIEISINITVKAVEENYFRVKKLCGLKNISHRERIALHDCLETIDETLDELHKAIVDLNEYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDDADKNLRDKLKEGQMEVEHMCSNALAMIKNMTDTDIANYEAKMGITKNRKLMAEEDDNNNDDGIQWPEWLSAGDRRLLQSSSVTPNVVVAADGSGNFRTVAAAVAAAPVRSSKRYVIRIKAGVYRENVEVPKKKTNIMFIGDGRRNTIITGSRNVVDGSTTFNSATMAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLVSGTVDFIFGNAAAIFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRPVQKSFPTFLGRPWKEYSRTVIMQCTISDVIDPKGWHEWSGSFALNTLFYGEYQNTGAGASTGGRVTWKGFRVIRSATEAESFTAGKFIGGGSWLSSTGFPFSLGL* 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21412382 21417568 + CsaV3_7G033930.1 Csa07g02304 537867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02304 595 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 230 IPR035513 -
Csa07g02304 595 Gene3D - 278 595 IPR012334 -
Csa07g02304 595 PANTHER PECTINESTERASE 29 594 - -
Csa07g02304 595 CDD PMEI-like_3 73 230 - -
Csa07g02304 595 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 230 IPR035513 -
Csa07g02304 595 SUPERFAMILY Pectin lyase-like 281 594 IPR011050 -
Csa07g02304 595 Pfam Pectinesterase 284 580 IPR000070 GO:0030599|GO:0042545
Csa07g02304 595 SMART PMEI_2 66 225 IPR006501 GO:0004857
Csa07g02304 595 ProSitePatterns Pectinesterase signature 1. 309 328 IPR018040 -
Csa07g02304 595 TIGRFAM PME_inhib: pectinesterase inhibitor domain 49 229 IPR006501 GO:0004857
Csa07g02304 595 Pfam Plant invertase/pectin methylesterase inhibitor 70 225 IPR006501 GO:0004857
Csa07g02304 595 ProSitePatterns Pectinesterase signature 2. 428 437 IPR033131 -
Csa07g02304 595 PANTHER PECTINESTERASE 29 594 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02798 Csa07g02304 CCT
Csa03g02798 Csa07g02304 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g00496 Csa-Chr5:3205369 Csa07g02304 Csa-Chr7:21412382 1.75E-160 dispersed
Csa06g01790 Csa-Chr6:15830169 Csa07g02304 Csa-Chr7:21412382 4.37E-132 dispersed
Csa07g01531 Csa-Chr7:15672436 Csa07g02304 Csa-Chr7:21412382 0 dispersed
Csa07g01533 Csa-Chr7:15682775 Csa07g02304 Csa-Chr7:21412382 0 dispersed
Csa07g01869 Csa-Chr7:18705097 Csa07g02304 Csa-Chr7:21412382 4.12E-166 dispersed
Csa03g02798 Csa-Chr3:26823594 Csa07g02304 Csa-Chr7:21412382 0 transposed
Csa06g03534 Csa-Chr6:28782584 Csa07g02304 Csa-Chr7:21412382 1.01E-151 transposed
Csa03g02796 Csa-Chr3:26809996 Csa07g02304 Csa-Chr7:21412382 5.32E-134 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02304 K01051 - csv:101212388 1168.68