Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02308 ATGTGGTGGAGATCGGCCTCTTTCATCCTCGACAAGCAGCAGGCTGAAGGAGCTTCAAAGGCCCCCGAAACCCTTTCCATTTCCCCACCCACGCAATCTTCTATGGCGGACGCATTTCAGAACCCTAACCCTAAAATTTCAGCCTATTACCAAAGCAGAGCTGCCCACACCGCCGTCGTCACCAGTGATTGGCTTGCCCAGGCGCAGGCCGCTGTTGGATTCCAAACCGACGATCAGATACCGTCGGAAACTGATACCAGGGACTCTGAATCCGGTAAGCCGTTTAGTGTGATTGATGAGTTTAATAACTGGAGGAAACAGCCGGATTTGGCTGAGGCCGTTGCAGCTATTCGGGCTTTGGCGGCCGTCATAAGGTCTAGTCAGGCCACGACTATGATGGAGCTCGAAATTGAGCTGAAAAAGGCTTCAGACTCCCTAAAATCGTGGGATACAACTTCGATATCATTGACAGCTGGCTGTGATTTGTTCATGCGGTATGTTACTCGAACCTCGGCTTTAGAATATGAGGATTTCAAGTCTGGTAAATCTCGCCTGATTGAACGCGCAGAAAAGTTTGGGGAGATATCCTGTAAGGCACGGAGAATTATTGCAATGCTTAGTCAGGATTTCATTTTTGATGGCTGTACAATTTTGGTCCATGGTTTCTCTAGAGTCGTGATGGAAGTTCTGAGGTTGGCTGCACAGAATAAGAAGCTCTTTAGAGTGTTTTGCACAGAAGGAAGACCGGACAGGACAGGTTTGCGTTTATCCAACGAGCTAGCCAAACTTGATGTCCCTGTAAAGCTCCTAATTGACTCAGCAGTAGCATATGCAATGGATGAGGTTGATATGGTCCTTGTTGGTGCTGATGGAGTAGTTGAGAGTGGAGGTATAATCAATATGATGGGCACATATCAAATTGCATTAGTGGCACATAGCATGAACAAACCGGTGTATGTGGCTGCTGAGAGTTACAAGTTTGCTCGACTGTACCCATTGGATCAAAAAGACATGGCCCCTGCTCTCCGTCCAATAGATTTTGGGGTTCCAATCCCATCAAAGGTTGAAGTTGAAAAATCTGCTCGAGACTATACTCCTCCTCAATACCTTACTCTTCTCTTTACAGATTTGGGTGTTCTCTCTCCATCTGTGGTGAGTGACGAACTCATCCAACTATATTTATAG 1185 46.75 MWWRSASFILDKQQAEGASKAPETLSISPPTQSSMADAFQNPNPKISAYYQSRAAHTAVVTSDWLAQAQAAVGFQTDDQIPSETDTRDSESGKPFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRSSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFKSGKSRLIERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGFSRVVMEVLRLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYAMDEVDMVLVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVEKSARDYTPPQYLTLLFTDLGVLSPSVVSDELIQLYL* 395
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21450899 21454808 + CsaV3_7G033970.1 Csa07g02308 537871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02308 394 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 38 394 - -
Csa07g02308 394 Gene3D - 94 195 IPR042528 -
Csa07g02308 394 SUPERFAMILY NagB/RpiA/CoA transferase-like 110 393 IPR037171 -
Csa07g02308 394 Coils Coil 132 152 - -
Csa07g02308 394 Gene3D - 198 394 IPR042529 -
Csa07g02308 394 MobiDBLite consensus disorder prediction 19 40 - -
Csa07g02308 394 Pfam Initiation factor 2 subunit family 108 382 IPR000649 GO:0044237
Csa07g02308 394 MobiDBLite consensus disorder prediction 13 40 - -
Csa07g02308 394 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 38 394 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa05g01660 Csa-Chr5:19732204 Csa07g02308 Csa-Chr7:21450899 8.94E-22 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02308 K03239 - csv:101211420 759.985