Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02313 ATGGTTTTTCATTCTCAAGTACCTGCTAGATATACTTGTAGGCTTCTTGCAATCCCTTATGGGAGTGTTCCTGAAGATAAATGTAAGAAGGATAATCCAGAGGATCAACAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCAAATCCTAGTAAAGATCAGTTTTGTAGGACTCTTGAATCGTATAAACCAAACATTGTTTACTTACAAGGGGAACAACTCGAGAATGATGAAGTTGGTTCTTTAGTATGGAGAGGTGTTGATTTGTCCAATGTAGAAGCGATAAGTGGGCTCTTTAATTATCCGTTGCCCACCACTGTATATTTGGATATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCGCATTTACTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGATGCATTTCAACTTGCACACGCTTCATTTAGGATGTATTGCTTGGGAAACAACTTTGTTCTTCCTAGCAGTAGTCATAAAGAAGTTAGTGAAGATCTGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATGTCGAACCCCTAGAGAAAGAGGTAGCTGATGATGAAGAAAGTTCATCAGAAGGAATTTCTGTGAACATTCTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGAAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTGCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATTTATCTACATGCAGTTTTGCCCACATTTCATTGTTGGTATCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGACTGAGATTATAGACAGAGGCGAACTAGTGCAGACACTACTCGATAGTGAAGGAAGCAAACACTTATCTGAACCACGCAAATCTACTTCAATTGCTTGTGGGGCAACGGTTTTTGAAGTTAGCTTGAAGGTCCCTTCATGGGCATCTCAGATTTTCAGGCAGTTAGCCCCTGACGTTTCTTATCGAAGTTTAGTGGGACTGGGCATTGCAAGCATCCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAGCGCCTCCTTTTCTTCTGTTCAAGGAAGGAAAATGATTTATTTCTGAGCAATTTAACTGATAGCACACTCCCAAGCTGGTTGAAGCCGCCTGCTCCTAGAAAGAGACCGAAATATATCAAAGATACGAGCCTTGGTTCTCATGAGATTATTGAACATCTGAAGGTATCGCCTGGTAGCAGAATACATGGTGCGAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCACTTCCAAGAAGGAGAGGCATGAAAATTGCGGCAATGAGGCCCATTCCTCACGTTAATCGCCATAAAATGATCTCTTTTCATGGAATATCTGAGACGGGCGGGCACAATGGAAGCCTGCTTAAAGCTAGTGTTCCTTCTAGTAATCCCACAAAGCATGTGACTGTAGGTTCAGCTTCAGTTTTCCAACAAAAAGTATTTCCAAGTGCGTCTCATTATAAACAAATCATTCCCATGAATCCACTACCTTTGAAAAAGCACGGTTGTGGCAGAAGTCATATACAGGCTTGCTTTGAGGAGGAATTTTTGAAGGATTTGATGCAGTTTTTAGCTCTTCGAGGTCACAGTCGACTTATTCCTCCAGGTGGGCTTGCTGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTCCGTGTTGGAAATGGCATTAATTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTAGAGTACGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGCCACAGTAGTGCAGCAGGGGACTGGGTGAACTGTGGCATTTGTGGAGAGTGGGCTCACTTCGGTTGCGATAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGCTTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTTGCAAATGGTTTATCTCCAGGCTTCTCCTCAAGACCAATATGA 2346 42.41 MVFHSQVPARYTCRLLAIPYGSVPEDKCKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRTLESYKPNIVYLQGEQLENDEVGSLVWRGVDLSNVEAISGLFNYPLPTTVYLDIAKGDEVADALHSKGIPYVIYWRSAFTCYAACHFRNAFLSVLQSSSAHTWDAFQLAHASFRMYCLGNNFVLPSSSHKEVSEDLGPHLLGERLKINVEPLEKEVADDEESSSEGISVNILDNDVEMRFLVCGEPGSLDAYVLEALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDLSTCSFAHISLLVSGSAQACFDDQLFENYIKTEIIDRGELVQTLLDSEGSKHLSEPRKSTSIACGATVFEVSLKVPSWASQIFRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKENDLFLSNLTDSTLPSWLKPPAPRKRPKYIKDTSLGSHEIIEHLKVSPGSRIHGANMEIGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMISFHGISETGGHNGSLLKASVPSSNPTKHVTVGSASVFQQKVFPSASHYKQIIPMNPLPLKKHGCGRSHIQACFEEEFLKDLMQFLALRGHSRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPI* 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21463407 21470492 + CsaV3_7G034010.1 Csa07g02313 537876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02313 781 SUPERFAMILY ARID-like 600 712 IPR036431 GO:0003677
Csa07g02313 781 SMART bright_3 598 702 IPR001606 GO:0003677
Csa07g02313 781 Gene3D - 593 700 IPR036431 GO:0003677
Csa07g02313 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 770 - -
Csa07g02313 781 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 4 770 IPR042293 -
Csa07g02313 781 SMART ARID_2 594 697 - -
Csa07g02313 781 Pfam ARID/BRIGHT DNA binding domain 601 697 IPR001606 GO:0003677
Csa07g02313 781 ProSiteProfiles ARID domain profile. 597 701 IPR001606 GO:0003677
Csa07g02313 781 SUPERFAMILY FYVE/PHD zinc finger 693 761 IPR011011 -
Csa07g02313 781 CDD ARID 600 697 - -
Csa07g02313 781 CDD PHD_ARID4_like 707 758 - -
Csa07g02313 781 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 701 764 IPR013083 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g02792 Csa07g02313 CCT
Csa03g02792 Csa07g02313 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02792 Csa-Chr3:26764328 Csa07g02313 Csa-Chr7:21463407 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32384 PF01388 ARID 1.10E-15 CL0123 Csa TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02313 - - csv:101214243 1598.18