Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02370 ATGGATGGAGGTGGAGCAGTGCACAATCGCTCAGTTGAAGATGTTTTCAGTGATTTTAGAGGACGGAGAAATGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGGTTTCCAAATGAAGTATGGGAAGTTAATCTACCTGCTGAAGAAGTACCCCCAGAACTTCCAGAGCCAGCATTGGGTATTAACTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTACATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAATCTGATAGGCGGCGGCTATTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTGGTCACTGGTATTGCAAAGAAACAAGTTAAGGAAAAATCATCAACTGCTAATGGTAGCAAATCCAAGTCAAGTTTTAAATCGAGGGAAGCTGAAATGCAAGGAATGTACGCAAGGCAGTCGCAGGCAAGGGAAGAGGTAGAGACGTTGTACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCACGGGAAGTGCGTTAGAATAACTCCGGCAAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAAGCCGCATTTAA 756 43.12 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKSDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSTANGSKSKSSFKSREAEMQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21860290 21862788 + CsaV3_7G034590.1 Csa07g02370 537933

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02370 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Csa07g02370 251 Coils Coil 172 192 - -
Csa07g02370 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 250 - -
Csa07g02370 251 Pfam PHD-finger 198 247 IPR019787 -
Csa07g02370 251 CDD PHD_AL_plant 197 247 IPR044104 -
Csa07g02370 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Csa07g02370 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Csa07g02370 251 PANTHER CPG BINDING PROTEIN 6 250 IPR045104 GO:0006355|GO:0042393
Csa07g02370 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Csa07g02370 251 SMART PHD_3 197 245 IPR001965 -
Csa07g02370 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02370 - - - csv:101222322 510.375
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00676 Csa-Chr3:5966227 Csa07g02370 Csa-Chr7:21860290 1.79E-115 dispersed
Csa03g03069 Csa-Chr3:28902930 Csa07g02370 Csa-Chr7:21860290 1.04E-96 dispersed
Csa06g02014 Csa-Chr6:18140076 Csa07g02370 Csa-Chr7:21860290 2.70E-135 dispersed
Csa07g02370 Csa-Chr7:21860290 Csa06g00239 Csa-Chr6:1639742 1.26E-06 dispersed
Csa07g02370 Csa-Chr7:21860290 Csa05g00818 Csa-Chr5:5926088 5.65E-120 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g122 . . . . . . . . Cmo08g00755 Cmo17g00678 . . . . . Cpe12g00597 Cpe17g00469 . . . . . . . . . . . . . . . . . . Lsi02g02913 Csa07g02370 . Cme01g02823 . . . . . . . . . . . . . Car08g00668 Car17g00661 . . Bhi09g00348 . . . . . . Cla09g00078 Cam09g0081 Cec09g0082 Cco09g0081 Clacu09g0089 . Cre09g0076 . . Chy01g02184 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Csa03g00676 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 6.2e-114 407.1
Csa06g02014 . 9 251 Alfin-like Transcription Factor Family AT1G14510 75.7 1.3e-95 346.3
Csa07g02370 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.9 6.1e-93 337.4
Csa03g03069 . 8 237 Alfin-like Transcription Factor Family AT1G14510 60.0 1.9e-78 289.3
Csa05g00818 . 8 238 Alfin-like Transcription Factor Family AT1G14510 60.2 1.9e-78 289.3
Csa06g02014 . 1 253 Alfin-like Transcription Factor Family AT5G26210 79.1 2.3e-108 388.7
Csa07g02370 . 1 250 Alfin-like Transcription Factor Family AT5G26210 64.5 8.3e-98 353.6
Csa03g00676 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.8 1.2e-93 339.7
Csa05g00818 . 7 240 Alfin-like Transcription Factor Family AT5G26210 58.7 4.1e-81 298.1
Csa03g03069 . 8 241 Alfin-like Transcription Factor Family AT5G26210 58.1 1.0e-79 293.5
Csa06g02014 . 1 253 Alfin-like Transcription Factor Family AT3G42790 74.7 6.0e-101 364.0
Csa07g02370 . 1 250 Alfin-like Transcription Factor Family AT3G42790 64.5 9.0e-97 350.1
Csa03g00676 . 9 256 Alfin-like Transcription Factor Family AT3G42790 71.8 2.8e-90 328.6
Csa05g00818 . 7 240 Alfin-like Transcription Factor Family AT3G42790 60.6 4.8e-82 301.2
Csa03g03069 . 8 239 Alfin-like Transcription Factor Family AT3G42790 58.3 6.5e-79 290.8
Csa05g00818 . 1 240 Alfin-like Transcription Factor Family AT5G05610 77.2 3.3e-112 401.4
Csa03g03069 . 1 241 Alfin-like Transcription Factor Family AT5G05610 75.2 5.4e-107 384.0
Csa07g02370 . 10 250 Alfin-like Transcription Factor Family AT5G05610 63.6 7.8e-90 327.0
Csa06g02014 . 8 253 Alfin-like Transcription Factor Family AT5G05610 63.8 5.1e-89 324.3
Csa03g00676 . 9 254 Alfin-like Transcription Factor Family AT5G05610 61.8 3.2e-83 305.1
Csa05g00818 . 43 240 Alfin-like Transcription Factor Family AT3G11200 80.1 1.6e-95 345.9
Csa03g03069 . 43 241 Alfin-like Transcription Factor Family AT3G11200 77.3 1.9e-88 322.4
Csa07g02370 . 44 250 Alfin-like Transcription Factor Family AT3G11200 64.8 3.4e-74 275.0
Csa06g02014 . 44 253 Alfin-like Transcription Factor Family AT3G11200 65.6 1.7e-73 272.7
Csa03g00676 . 44 254 Alfin-like Transcription Factor Family AT3G11200 62.6 7.4e-69 257.3
Csa03g00676 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.4e-76 283.1
Csa06g02014 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.8 4.1e-65 245.0
Csa07g02370 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.0e-63 238.8
Csa03g03069 . 8 135 Alfin-like Transcription Factor Family AT2G02470 74.6 9.6e-54 207.2
Csa05g00818 . 8 155 Alfin-like Transcription Factor Family AT2G02470 67.5 1.3e-53 206.8
Csa06g02014 . 1 167 Alfin-like Transcription Factor Family AT5G20510 78.0 6.2e-74 273.9
Csa07g02370 . 1 162 Alfin-like Transcription Factor Family AT5G20510 74.5 5.1e-68 254.2
Csa03g00676 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.4e-67 250.4
Csa05g00818 . 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 1.3e-52 203.0
Csa03g03069 . 7 157 Alfin-like Transcription Factor Family AT5G20510 63.1 3.9e-52 201.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32390 PF12165 Alfin 7.00E-68 No_clan Csa TF