Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02370 ATGGATGGAGGTGGAGCAGTGCACAATCGCTCAGTTGAAGATGTTTTCAGTGATTTTAGAGGACGGAGAAATGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGGTTTCCAAATGAAGTATGGGAAGTTAATCTACCTGCTGAAGAAGTACCCCCAGAACTTCCAGAGCCAGCATTGGGTATTAACTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTACATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAATCTGATAGGCGGCGGCTATTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTGGTCACTGGTATTGCAAAGAAACAAGTTAAGGAAAAATCATCAACTGCTAATGGTAGCAAATCCAAGTCAAGTTTTAAATCGAGGGAAGCTGAAATGCAAGGAATGTACGCAAGGCAGTCGCAGGCAAGGGAAGAGGTAGAGACGTTGTACGAAGAAGATGAAGACGAGCACGGTGACACCTTATGTGGGGCATGTGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCACGGGAAGTGCGTTAGAATAACTCCGGCAAAAGCCGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAAGAGAAGCCGCATTTAA 756 43.12 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKSDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSTANGSKSKSSFKSREAEMQGMYARQSQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNKRSRI* 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21860290 21862788 + CsaV3_7G034590.1 Csa07g02370 537933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02370 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Csa07g02370 251 Coils Coil 172 192 - -
Csa07g02370 251 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 3-LIKE ISOFORM X1 6 250 - -
Csa07g02370 251 Pfam PHD-finger 198 247 IPR019787 -
Csa07g02370 251 CDD PHD_AL_plant 197 247 IPR044104 -
Csa07g02370 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Csa07g02370 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Csa07g02370 251 PANTHER CPG BINDING PROTEIN 6 250 IPR045104 GO:0006355|GO:0042393
Csa07g02370 251 Pfam Alfin 11 139 IPR021998 GO:0006355|GO:0042393
Csa07g02370 251 SMART PHD_3 197 245 IPR001965 -
Csa07g02370 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g00676 Csa-Chr3:5966227 Csa07g02370 Csa-Chr7:21860290 1.79E-115 dispersed
Csa03g03069 Csa-Chr3:28902930 Csa07g02370 Csa-Chr7:21860290 1.04E-96 dispersed
Csa06g02014 Csa-Chr6:18140076 Csa07g02370 Csa-Chr7:21860290 2.70E-135 dispersed
Csa07g02370 Csa-Chr7:21860290 Csa06g00239 Csa-Chr6:1639742 1.26E-06 dispersed
Csa07g02370 Csa-Chr7:21860290 Csa05g00818 Csa-Chr5:5926088 5.65E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32390 PF12165 Alfin 7.00E-68 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02370 - - csv:101222322 510.375