Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02371 ATGAATCTAGGTGCGGCGGAGGAAGAATCGCCGCAAGAAATTCATATTCCGGCCGAAATCGATTGGCAGATGCTCGATAAATCTAAATTCTTTTTTCTCGGTGCAGCGTTGTTTTCAGGTGTTTCCGCTTCTCTTTACCCTATGGTTGTGTTGAAAACTCGTCAACAGGTTTCTCATTCGCAACTTTCTTGCATCAGAACCGCATTTTCTCTTGTCCGCCATGAAGGTTTCCGAGCTCTTTACCGAGGATTTGGTACTTCTCTAATGGGAACTATCCCTGCTAGAGCTTTATACATGGGAGCTCTTGAGATTACAAAGAGCTATGTCGGAACTGCCACCATTAGAGTTGGATTCCCAGAAACTAGTGCAGCTACCATTGCTAACGCCGCTGCTGGATTGAGTGCGGCAATGGCAGCTCAGCTTGTATGGACTCCTGTTGATGTTGTGAGTCAAAGACTCATGGTTCAACCTAGATACAACAATCCCAATTCTTCCTCAACTCATTACATCAATGGAATCGATGCCTTTCGAAAGATCCTCAAGGCCGATGGCCTCCGTGGCCTCTACCGAGGATTTGGAATATCAATTTTGACCTACGCACCGTCGAATGCCGTGTGGTGGGCATCTTATTATGTAGCACAGCGGCTGGTTTGGGGTGGAATTGGGTGCTGTTATCATGCAAAGAAGGTTCAGGTTGATGAAGATAATGAAAATGGAGGATATAGTAACAATGTCTACAAACCCGATTCCAAAACTGTGATTGCAGTTCAAGGAGCGAGCGCAGCAATGGCAGGGAGTATATCAGCCTTGATAACAATGCCACTCGATACCATCAAGACGAGATTGCAAGTGTTGGATGGGGATGAAAATGGGAGAAGAGGACCAACTATAGGACAGACATTGAGGAATTTGGTGCGGGAAGGAGGATGGACGGCTTGTTATCGAGGGTTGGCACCCCGGTGTGCATCCATGTCGATGTCTGCGACGACAATGATCACTACATACGAGTTTTTGAAACGGCTATCAACAAAGAATCAAGAGAGTTTAACAAGCTAA 1056 46.02 MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVSHSQLSCIRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALEITKSYVGTATIRVGFPETSAATIANAAAGLSAAMAAQLVWTPVDVVSQRLMVQPRYNNPNSSSTHYINGIDAFRKILKADGLRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCCYHAKKVQVDEDNENGGYSNNVYKPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWTACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNQESLTS* 352
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21864313 21865368 - CsaV3_7G034600.1 Csa07g02371 537934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02371 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 26 108 IPR018108 -
Csa07g02371 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 123 216 IPR018108 -
Csa07g02371 351 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J 1 348 - -
Csa07g02371 351 Gene3D Mitochondrial carrier domain 30 350 IPR023395 -
Csa07g02371 351 PRINTS Mitochondrial carrier protein signature 81 99 IPR002067 GO:0055085
Csa07g02371 351 PRINTS Mitochondrial carrier protein signature 132 154 IPR002067 GO:0055085
Csa07g02371 351 SUPERFAMILY Mitochondrial carrier 23 338 IPR023395 -
Csa07g02371 351 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER-LIKE PROTEIN 1 348 - -
Csa07g02371 351 Pfam Mitochondrial carrier protein 38 109 IPR018108 -
Csa07g02371 351 Pfam Mitochondrial carrier protein 126 217 IPR018108 -
Csa07g02371 351 Pfam Mitochondrial carrier protein 256 345 IPR018108 -
Csa07g02371 351 ProSiteProfiles Solute carrier (Solcar) repeat profile. 252 341 IPR018108 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g02371 Csa-Chr7:21864313 Csa05g00280 Csa-Chr5:1725517 3.92E-24 dispersed
Csa03g01544 Csa-Chr3:11534182 Csa07g02371 Csa-Chr7:21864313 1.28E-74 transposed
Csa05g03044 Csa-Chr5:30566402 Csa07g02371 Csa-Chr7:21864313 1.08E-66 transposed
Csa04g02565 Csa-Chr4:25248807 Csa07g02371 Csa-Chr7:21864313 4.36E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02371 K15121 - csv:101210602 664.455