Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02378 ATGGCAGGTTTAGCTCCAGAAGGAACCCAATTTGATTCTCGCCAATACGATGCTAAAATGAATGAGATTCTTTCAGCCGAAGGGCAGGAATTTTTTACCTCATACGATGAAGTTTATGAAAGTTTTGATTCGATGGGGCTGCAAGAGAACCTCCTCAGAGGCATTTATGCCTATGGTTTTGAGAAACCTTCTGCAATTCAGCAAAGAGGTATAGTTCCCTTCTGCAAGGGCCTCGATGTGATTCAGCAGGCTCAATCTGGAACTGGAAAAACTGCAACTTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAGTCCAGTGCCAGGCATTAGTTTTGGCACCGACTAGGGAGCTGGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGAGTTAAGGTTCATGCTTGCGTGGGAGGGACAAGTGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTGAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGACCAGATCTATGATATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTATTCTCAGCCACAATGCCTCCGGAAGCTTTGGAGATCACTAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAAGGTATCAAACAATTTTACGTAAATGTTGATAAGGAAGATTGGAAGCTTGAAACTCTATGTGATCTGTACGAGACTCTGGCTATCACTCAAAGTGTCATCTTTGTTAACACACGTCGCAAGGTTGATTGGCTTACGGACAAGATGAGAAGCCGTGATCATACCGTATCGGCCACTCATGGTGACATGGACCAGAACACTCGTGATATAATCATGCGTGAATTTCGTTCTGGGTCGTCTCGTGTTCTTATCACAACTGACTTGTTAGCTCGTGGTATCGATGTTCAGCAAGTGTCCCTTGTCATAAATTATGATTTGCCGACCCAACCTGAAAATTACCTCCATCGAATTGGTCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGGTCATTGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA 1242 43.24 MAGLAPEGTQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDERMLFDIQKFYNVVIEELPANVADLL* 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21924633 21928096 + CsaV3_7G034670.1 Csa07g02378 537941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02378 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Csa07g02378 413 Pfam DEAD/DEAH box helicase 65 226 IPR011545 GO:0003676|GO:0005524
Csa07g02378 413 PANTHER EUKARYOTIC INITIATION FACTOR 4A-2 23 413 - -
Csa07g02378 413 Gene3D - 249 413 IPR027417 -
Csa07g02378 413 CDD DEADc_EIF4A 45 242 - -
Csa07g02378 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Csa07g02378 413 Gene3D - 30 248 IPR027417 -
Csa07g02378 413 CDD SF2_C_DEAD 253 383 - -
Csa07g02378 413 PANTHER RNA HELICASE 23 413 - -
Csa07g02378 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Csa07g02378 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Csa07g02378 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Csa07g02378 413 SMART helicmild6 293 374 IPR001650 -
Csa07g02378 413 SMART ultradead3 59 256 IPR014001 -
Csa07g02378 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa07g02378 Csa-Chr7:21924633 Csa03g02019 Csa-Chr3:16181833 2.95E-63 dispersed
Csa03g02840 Csa-Chr3:27153934 Csa07g02378 Csa-Chr7:21924633 0 transposed
Csa03g03338 Csa-Chr3:30283466 Csa07g02378 Csa-Chr7:21924633 9.86E-66 transposed
Csa05g01382 Csa-Chr5:14679705 Csa07g02378 Csa-Chr7:21924633 7.19E-66 transposed
Csa06g02935 Csa-Chr6:25427974 Csa07g02378 Csa-Chr7:21924633 3.41E-13 transposed
Csa03g04064 Csa-Chr3:35570090 Csa07g02378 Csa-Chr7:21924633 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02378 K03257 - csv:101221456 819.305