Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02379 ATGAAGATGGAGTCAATGAGACGGGGAAGGATAAGGCAGAGGATCCGCCGAAGCCATCTTTATACGTTTGCTGCTTGCCTCCGTGCAGACAGCGCGCGGGAGGTTGACGATTCAAATCCTTTAACAGGACCTGGCTTTTCACGAGTTGTATGTTGTAATCAGCCTCAAACCCATGAGAGAAAGCCATTGAAATACTGCACAAATTACATATCCACGACCAAGTATAATGTTCTTTCTTTTGTGCCTAAGGCTCTCTTTGAGCAATTCCGAAGAGTTGCCAATTTGTACTTTCTTTTGGCTGCGTTGTTATCGCTCACACCAGTTGCCCCATTTTCTGCTGTGAGCATGATTGCTCCTTTGGTATTTGTTGTTGGGCTCAGTATGGCTAAAGAAGCTCTTGAGGACTGGCGTCGATTTGTGCAGGATATGAAGGTTAACCTCAGGAAAGCGAGTGTCCACAAAGGGGAAGGTGTTTTTGGCCATAGACCATGGCACAAGCTCCGAGTAGGAGATATAGTGAAAGTACAGAAGGATCAGTTCTTTCCAGCTGATCTACTCCTCTTGTCGTCGTGCTATGAGGATGGTATATGTTATGTGGAAACGATGAATTTGGATGGTGAAACCAATCTCAAAGTAAAGAGAGCTTTGGAAGTAACCTTACCATTGGATGATGATGCAACTTTCAAAGATTTTTCTGGAAAAATTTACTGTGAAGATCCAAACCCAAATCTTTACACCTTTGTAGGTAACTTTGAGTATGATCGGCAGGTTTATCCTCTTGATCCTAATCAGATTCTCCTCAGAGATTCAAAATTGAGGAATACAGCTTATGCCTATGGGGTGGTGATATTTACTGGACATGATAGCAAAGTCATGCAGAATGCTACAAAATCCCCTTCAAAAAGAAGTAGAATAGAGAGAAAAATGGACAAAATTATTTACATCCTTTTCACTCTACTTATATTGATCTCATCGATAAGCTCAATAGGTTTTGCTGTGAAAACTAAGTACCAAATGACAGACTGGTGGTATTTACGAACTACTGGTGATGACCATGATCCACTGTACAACCCTCGTAAGCCAACCTTATCAGGGCTCATACATTTAATCACTGCTCTTATACTTTATGGATATTTGATACCCATCTCGTTATATGTTTCCATCGAGGTTGTTAAGGTTCTCCAAGCTTCCTTCATTAACCAAGATATTAACATGTATTGTGAGGAGACTGCCAATCCAGCTCAAGCTAGAACTTCCAATTTGAATGAGGAATTGGGTCAGGTAGACACAATCCTATCTGACAAAACAGGCACTTTGACTTGCAATCAAATGGACTATCTGAAATGTTCCATTGCTGGCACTGCATATGGTGTTAAATCTAGTGAGGTTGAACTTGCAGCTGCAAGGCAGATGGCATATGACTTCGAGGAGCAGGACGGAGAATTTTCCGATGTCCATGGACAAAAGAATAGCCAGCCGTCTTCAATGCCACATAGCAGATTAGGTTCTGAGATTGAGCTGGAGACTGTTGTTACTTCAACTGATGGCAAGGATCAGAAGTCTGCCATAAAGTATTTTAGTTTTGAGGACAGCCGCCTGACTGGTGGAAACTGGTTGAATGAGCCTAATCATGATGTTCTTTTATTGTTCTTCCGAATTTTAGCAATTTGTCACACTGCAATTCCTGAACTGAATGAGGAGACCGGCGTTTATACATACGAGGCAGAGTCCCCGGATGAAGGTGCTTTTCTTGTTGCAGCTAGAGAATTTGGTTTTGAATTTTGTAAGAGAACACAGTCAACCTTGGTTGTCCGTGAAAGGTATCCTTCACCTGACCAAGTAGTTGAAAGGGAATACAAAATTTTGAATCTATTGGATTTCACAAGCAAGAGAAAGAGAATGTCTGTAATTATTAAGGACGAGGAGGGCCAGATTCTTCTTCTCTGCAAAGGTGCCGATAGCATCATCTTTGATCGACTATCAAAGAATGGAAGAATGTATGAGGAAGCAACCACAAGGCATTTGAATGAATATGGAGAAGCAGGGCTACGAACTCTGGCACTTGCTTATAGGAAGCTCGAGGAAGCTGAATATAATGCTTGGAACAATGAGTTTCAGAAGGCTAAGACGTCAATCGGAGGAGATAGAGATGCAATGCTTGAGCGAGTATCCGATCTCATGGAGCGAGAATTAATCCTTGTTGGTGCTACTGCTGTGGAGGACAAGTTACAGAATGGGGTGCCTCAATGTATAGACAAACTTGCACAAGCTGGTCTTAAGATCTGGGTTCTGACAGGAGATAAGATGGAAACTGCTATCAACATAGGATATGCATGCAGTTTACTACGACAGGGAATGAAGCGGATCTGCATATCAACAACCTCAGACTCCTTAGCACAGGATGGGAAAGAGGCCATGAAAGAAAATATTTTGAATCAAATCACCAATGCCGCACAAATGATCAAGCTGGAAAATGATCCACATGCTGCATTTGCTTTAATCATTGATGGGAAGACTTTAACATACGCCCTTGAGGATGATATGAAGCTTCAATTCCTTGGACTCGCTGTTGATTGTGCATCGGTCATTTGCTGCCGTGTCTCCCCCAAGCAGAAGGCACTGGTAACAAGGTTAGTGAAAGAAGGTACTGGGAAAACTACTTTAGCAATTGGCGATGGTGCAAACGATGTAGGAATGATTCAAGAGGCCGATATTGGTGTCGGTATCAGTGGGGTTGAAGGTATGCAGGCTGTGATGGCTAGTGATTTCTCTATAGCTCAATTTCGGTTTCTTGAAAGGCTTCTGGTAGTCCATGGTCATTGGTGCTACAAGAGGATAGCACAAATGATTTGCTATTTCTTCTATAAGAATATTGCATTTGGATTAACGCTATTCTACTTCGAAGCATATGCTGGATTTTCTGGGCAATCAATTTATGATGATTTCTACATGCTATCATTTAATGTCATACTCACCTCATTGCCTGTAATTTCCCTTGGTGTATTTGAGCAAGATGTCCCTTCTGAGGTGTGCCTACAGTTCCCTGCACTATATCAGCAAGGACCTCGAAACTTGTTCTTTGACTGGCCTCGAATTTTCGGATGGATGGGGAATGCTCTCTACTCATCTCTAGTTACTTTCTTTCTCAATCTCATCATCTTCTATGACCAGGCCTTCCGTTCGGGCGGCCAAACTGCAGATATGACTGCTGTAGGAACCACCATGTTTACTTGCATCATATGGGCAGTAAATTGCCAGATTGCTCTCACAATGAGCCATTTCACCTGGATCCAACACCTTCTCGTCTGGGGTAGCATTGCGATGTGGTATTTGTTCATCTTACTCTATGGAATGATTATATCCTCTGGGAATGCGTATAAAATCTTTGTCGAAGCTCTAGGACCTGCCCCTGTTTATTGGATAGCCACAATTTTAGTAACGATTACCTGTAATCTCCCGTATCTTGCTCACATATCCTTCCAGAGAAGCTTCCATCCAATGGATCATCACATTATCCAAGAAATCAAGTACTACAGAAAGGATGTTGAAGATACGCACATGTGGACCAGGGAAAGATCAAAAGCAAGGCAAAAGACAAAGATAGGATTCACAGCCAGAGTAGAAGCAAAGATCAGACAGTTAAAAGGAAGGCTGCAAAAGAAGCACTCTTCCCTTGGCATGCCTCCGAATGCTACTACTACTGCTATATCATGA 3714 42.33 MKMESMRRGRIRQRIRRSHLYTFAACLRADSAREVDDSNPLTGPGFSRVVCCNQPQTHERKPLKYCTNYISTTKYNVLSFVPKALFEQFRRVANLYFLLAALLSLTPVAPFSAVSMIAPLVFVVGLSMAKEALEDWRRFVQDMKVNLRKASVHKGEGVFGHRPWHKLRVGDIVKVQKDQFFPADLLLLSSCYEDGICYVETMNLDGETNLKVKRALEVTLPLDDDATFKDFSGKIYCEDPNPNLYTFVGNFEYDRQVYPLDPNQILLRDSKLRNTAYAYGVVIFTGHDSKVMQNATKSPSKRSRIERKMDKIIYILFTLLILISSISSIGFAVKTKYQMTDWWYLRTTGDDHDPLYNPRKPTLSGLIHLITALILYGYLIPISLYVSIEVVKVLQASFINQDINMYCEETANPAQARTSNLNEELGQVDTILSDKTGTLTCNQMDYLKCSIAGTAYGVKSSEVELAAARQMAYDFEEQDGEFSDVHGQKNSQPSSMPHSRLGSEIELETVVTSTDGKDQKSAIKYFSFEDSRLTGGNWLNEPNHDVLLLFFRILAICHTAIPELNEETGVYTYEAESPDEGAFLVAAREFGFEFCKRTQSTLVVRERYPSPDQVVEREYKILNLLDFTSKRKRMSVIIKDEEGQILLLCKGADSIIFDRLSKNGRMYEEATTRHLNEYGEAGLRTLALAYRKLEEAEYNAWNNEFQKAKTSIGGDRDAMLERVSDLMERELILVGATAVEDKLQNGVPQCIDKLAQAGLKIWVLTGDKMETAINIGYACSLLRQGMKRICISTTSDSLAQDGKEAMKENILNQITNAAQMIKLENDPHAAFALIIDGKTLTYALEDDMKLQFLGLAVDCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTLFYFEAYAGFSGQSIYDDFYMLSFNVILTSLPVISLGVFEQDVPSEVCLQFPALYQQGPRNLFFDWPRIFGWMGNALYSSLVTFFLNLIIFYDQAFRSGGQTADMTAVGTTMFTCIIWAVNCQIALTMSHFTWIQHLLVWGSIAMWYLFILLYGMIISSGNAYKIFVEALGPAPVYWIATILVTITCNLPYLAHISFQRSFHPMDHHIIQEIKYYRKDVEDTHMWTRERSKARQKTKIGFTARVEAKIRQLKGRLQKKHSSLGMPPNATTTAIS* 1238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21930097 21937856 - CsaV3_7G034680.1 Csa07g02379 537942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02379 1237 Gene3D - 442 464 IPR023299 GO:0000166
Csa07g02379 1237 Gene3D - 595 709 IPR023299 GO:0000166
Csa07g02379 1237 SUPERFAMILY Calcium ATPase, transmembrane domain M 59 1162 IPR023298 -
Csa07g02379 1237 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 862 971 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Csa07g02379 1237 ProSitePatterns E1-E2 ATPases phosphorylation site. 434 440 IPR018303 -
Csa07g02379 1237 Gene3D - 429 441 IPR023214 -
Csa07g02379 1237 CDD P-type_ATPase_APLT_Dnf-like 68 1049 - -
Csa07g02379 1237 MobiDBLite consensus disorder prediction 1218 1237 - -
Csa07g02379 1237 MobiDBLite consensus disorder prediction 482 501 - -
Csa07g02379 1237 Pfam Cation transport ATPase (P-type) 556 661 - -
Csa07g02379 1237 Pfam Phospholipid-translocating P-type ATPase C-terminal 918 1166 IPR032630 -
Csa07g02379 1237 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 6 1228 - -
Csa07g02379 1237 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1228 - -
Csa07g02379 1237 Gene3D - 730 930 IPR023214 -
Csa07g02379 1237 SUPERFAMILY HAD-like 420 934 IPR036412 -
Csa07g02379 1237 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 65 1174 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Csa07g02379 1237 SFLD p-type atpase 415 941 IPR044492 -
Csa07g02379 1237 MobiDBLite consensus disorder prediction 485 499 - -
Csa07g02379 1237 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 530 697 IPR023299 GO:0000166
Csa07g02379 1237 Pfam Phospholipid-translocating ATPase N-terminal 51 117 IPR032631 -
Csa07g02379 1237 SFLD C1.7: P-type atpase like 415 941 - -
Csa07g02379 1237 SUPERFAMILY Calcium ATPase, transduction domain A 156 295 IPR008250 -
Csa07g02379 1237 Gene3D - 125 298 - -
Csa07g02379 1237 PRINTS P-type cation-transporting ATPase superfamily signature 432 446 - -
Csa07g02379 1237 PRINTS P-type cation-transporting ATPase superfamily signature 890 909 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g00872 Csa-Chr2:8123011 Csa07g02379 Csa-Chr7:21930097 0 dispersed
Csa05g02560 Csa-Chr5:26977036 Csa07g02379 Csa-Chr7:21930097 0 dispersed
Csa06g00450 Csa-Chr6:3849237 Csa07g02379 Csa-Chr7:21930097 1.03E-106 dispersed
Csa06g00451 Csa-Chr6:3851908 Csa07g02379 Csa-Chr7:21930097 3.51E-88 dispersed
Csa07g00483 Csa-Chr7:3494288 Csa07g02379 Csa-Chr7:21930097 5.84E-159 dispersed
Csa07g02379 Csa-Chr7:21930097 Csa01g00638 Csa-Chr1:4052892 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02379 K01530 - csv:101221220 2440.61