Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02385 ATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCTAATAAATCTGAATTTCCCAATCAGTATTTTGCTCCTCAAACAACCCAACAACAACAACCTCCTCCTCCTAAGAAGAAGCGCAACCTTCCTGGAAATCCCGACCCAGATGCTGAAGTGATAGCGTTATCGCCGAAGACATTGATGGCGACGAATAGGTTTGTGTGTGAGATATGCAACAAAGGGTTTCAGAGAGATCAGAATCTACAACTACATAGAAGAGGACACAATTTGCCATGGAAACTAAAGCAAAGATCAAACAAAGAGATAATAAAGAAGAAAGTATATGTTTGTCCAGAAGTGAGTTGTGTTCATCACGATCCATCAAGAGCACTTGGAGATTTAACAGGAATTAAGAAGCACTTTTGTAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAATGCTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCCAAGATCTGTGGCACTAAAGAGTATAGATGTGACTGTGGCACTCTCTTTTCAAGGAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCAATGGCATTAAACCCTCTTCTCTCATCTTACAACCACAATAACAATAATAGTAATTCACAAGATCATCAATTTTGTAATAATCTCGCTCTTAAACGAGATTTCGACGACACCAACAACAGCAACAACAACAACCATTTGAGAGTGGAAATTCCACCGTGGCTACAGCCATCATCAGATCATCTGATGGTGGGGAGTGGCGGCCAAGGGGAGAACAATGATGAAACTGTAAACCCTAACCCTAGTAGTAATAGTAGTAGTAGGGGGTGCGGGGCCAACAGGAGAAGTGTTGGTGTTGGCGTTGGTACTCCTAATAATCCTAATCATCCTTGTGAGTTATACCAATCGTCTTCACATATATCAGCGACTGCACTGCTGCAGAAGGCAGCCCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTTTCCCAAGGCCCCACAACCTTCTTCACGTGTCTACAGGTAATTTTGGAGAGATAGGATTATGGTCAGGTGATGTTGAAATTGGTAGAGGAGGAGGAGGTGGAGGTGGAGGAGGAGGAGGAGGAGCTGTGAGTTGTAGCAGTAGTAGTTGTACTGATTACGGGAATAAAGCTGCTGCTTCTGCTTCTGCTACTGCTTCTGCTTCCGCTTCGGCTTCCACCACTTTTCTTCACGACATTATTAACAATTCCCTATCTTCTCCTTCTCCTTCTCATCCTAACTTCCTCCAACAACACAACTCCTCCTTCCCCGACACCGCTTTCGCAGCTATGCATCATCATCAGCATCATCACAACGTACCCATCATCCCCACCACTGCCCCGGCTTCAGGCGGTCGAAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCCCATGGAGATATTCTAAGCCTTACTGGTTTTGGAAATTGTATTGTTCCTAATTCCTCCAATCTTCACCCTCAAATCCAGAAGCCATGGCAGGGTTAG 1602 43.95 MDENLSNLTSASGEATASVSSANKSEFPNQYFAPQTTQQQQPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEIIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNHNNNNSNSQDHQFCNNLALKRDFDDTNNSNNNNHLRVEIPPWLQPSSDHLMVGSGGQGENNDETVNPNPSSNSSSRGCGANRRSVGVGVGTPNNPNHPCELYQSSSHISATALLQKAAQMGATMSSTTTTSGSFPRPHNLLHVSTGNFGEIGLWSGDVEIGRGGGGGGGGGGGGAVSCSSSSCTDYGNKAAASASATASASASASTTFLHDIINNSLSSPSPSHPNFLQQHNSSFPDTAFAAMHHHQHHHNVPIIPTTAPASGGRSDGLTRDFLGLRPLSHGDILSLTGFGNCIVPNSSNLHPQIQKPWQG* 534
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21971899 21975905 + CsaV3_7G034740.1 Csa07g02385 537948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02385 533 Gene3D Classic Zinc Finger 54 125 - -
Csa07g02385 533 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Csa07g02385 533 MobiDBLite consensus disorder prediction 266 312 - -
Csa07g02385 533 MobiDBLite consensus disorder prediction 272 302 - -
Csa07g02385 533 MobiDBLite consensus disorder prediction 1 37 - -
Csa07g02385 533 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Csa07g02385 533 SUPERFAMILY beta-beta-alpha zinc fingers 74 172 IPR036236 -
Csa07g02385 533 Gene3D Classic Zinc Finger 130 209 - -
Csa07g02385 533 MobiDBLite consensus disorder prediction 1 59 - -
Csa07g02385 533 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 7 513 - -
Csa07g02385 533 SMART c2h2final6 75 97 IPR013087 -
Csa07g02385 533 SMART c2h2final6 152 172 IPR013087 -
Csa07g02385 533 SMART c2h2final6 117 147 IPR013087 -
Csa07g02385 533 Pfam Zinc finger, C2H2 type 75 97 IPR013087 -
Csa07g02385 533 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 513 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa06g03225 Csa-Chr6:27277593 Csa07g02385 Csa-Chr7:21971899 3.59E-110 dispersed
Csa07g02385 Csa-Chr7:21971899 Csa01g01294 Csa-Chr1:8215758 1.55E-107 dispersed
Csa03g04077 Csa-Chr3:35706524 Csa07g02385 Csa-Chr7:21971899 2.39E-123 wgd
Csa04g02543 Csa-Chr4:25110072 Csa07g02385 Csa-Chr7:21971899 2.73E-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32391 PF00096 zf-C2H2 0.0054 CL0361 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02385 K25870 - csv:101220200 930.628