Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02387 ATGAGCCCCATCACTCACCACCACCACCACCTTTCCAAATCCTCCACCGCCCCCGTCACAACCACCACTTCTTCCTCCACTACCCAAGCCTGCGCCGCTTGTAAATACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTTGCTCCTTATTTCCCTCACGATCGTCAACGTCAATTCTTAAACGCTCATAAACTCTTCGGTGTTAGCAATATTACTAAAATTATCAAGAATCTTGATCCCTTTGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTCCGATCCGTTGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGATCTTCAACGTCAAATTGAATATAATAAGGCCGAGCTTGAGATTGTGCTTCATCAATTGGCGATTTGTAAGCAACAGGCCGCTGCTGCCGCGGCTGCTGCTGCTGCCGCCGCGATTCTTGAAGGGGATCCGATGACTGGATATGGCGGGATTGAGCATCAGTTTGTGGAAGGATATGAAGGCGAAGGGTTTGTGGTTGGGGAAAATGAGAATGGAGAGAGTTTGGAAGATCAGGAAGTGGAGGTTTGGGGAATTCAAGATTCCTGTTCTTCATTGCAATTGAAACAAGCTGGCTCTGTTCATGATTTTCATGACATCAAAATCCACGATAATAATCATCATCAACATCATCATCAACAACAACTTCTTAAATTTCAAATCGATCATCATCAAGATTTGGTTCATCAAAGTGAAGAACCAATGCTGAAGATGGACAATATGATATTGAAAGAAGATTCTGACCCAATACAACAGGTTCAAGATCAAGAACTTAAAGGTGCAGTAGACACTTTATTTACCTTCCCATCTTGTGATACTTAG 870 43.45 MSPITHHHHHLSKSSTAPVTTTTSSSTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYNKAELEIVLHQLAICKQQAAAAAAAAAAAAILEGDPMTGYGGIEHQFVEGYEGEGFVVGENENGESLEDQEVEVWGIQDSCSSLQLKQAGSVHDFHDIKIHDNNHHQHHHQQQLLKFQIDHHQDLVHQSEEPMLKMDNMILKEDSDPIQQVQDQELKGAVDTLFTFPSCDT* 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21984527 21986956 + CsaV3_7G034760.1 Csa07g02387 537950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02387 289 Pfam Lateral organ boundaries (LOB) domain 30 125 IPR004883 -
Csa07g02387 289 ProSiteProfiles LOB domain profile. 29 130 IPR004883 -
Csa07g02387 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 24 249 - -
Csa07g02387 289 PANTHER LOB DOMAIN-CONTAINING PROTEIN 22 24 249 - -
Csa07g02387 289 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa02g01835 Csa-Chr2:17560164 Csa07g02387 Csa-Chr7:21984527 7.44E-28 dispersed
Csa02g02640 Csa-Chr2:22982621 Csa07g02387 Csa-Chr7:21984527 6.90E-23 dispersed
Csa05g02960 Csa-Chr5:29931622 Csa07g02387 Csa-Chr7:21984527 1.20E-32 dispersed
Csa07g02387 Csa-Chr7:21984527 Csa02g00714 Csa-Chr2:5807886 2.37E-29 dispersed
Csa07g02387 Csa-Chr7:21984527 Csa01g00123 Csa-Chr1:692578 1.78E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32392 PF03195 LOB 1.10E-35 No_clan Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02387 - - csv:105436286 483.796