Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02390 ATGAGTGAAGGGAAAAAGAGGAGAGATCTGATGAAAACTGCAGAAATTTCCTTTGAAATTGGGACTCTGATGGGGTTTCGATTACTGTTTCTGCTGTTTCAAATTGGTTTTGCTGTTAGCTTTTTCTCTGTCTGTGAAGCTGCAGTTGTTCTCCCAGGCAGATTGAGCGGATCGCATTCTGTACTCCGAGACCATGCTGTCACTCCAACATCTCATGGCTTTGGCAGGAAACACCATGGCAATTTGTATAGTGCTGCCCCTAGGAAACCATTTAAAACTTCATCTCCTCAGATCCATTCTCATTATAAAGCCTTTCAATCAGATGATTCAAGTAGAGCTCCTAGCATTGCACTTCCACCTACCACGCCTGCTAAGAAATGGGGGCATGAACATACATTCTCACCATCGATCTCTTTTCATAAATTCCGCCATTCAAGAAGGAAGTTCAGAAACAATGCTCCACAGCCTACTTATCATGCATTGCCTCCGACTAGCAGCCGGCAAGGTCCTGCTGCTGTCTCTCCAATTCAGTCACCATTACCATCTGCAGCAAGAGGAAGGTATCCCGGACCTGCGCCATCACCAACAATTCGACCCAGCCATTACTATATGCCCATTCCTGCACCTACAACATCTCCAATGGGTTCTTACAAGAAGAAGAAGAGCATGCCGCCATCACAAGTTATGATGCTGCCACCTCCACCTCCTAATGGGGATTGTACAATATCATGTACAGAGCCATTGACGTATACACCACCTGGAACGCCATGTGGCTGTGTGTGGCCGATTCAAGTTCAAATCACTCTTGATGTTGCAGTATACGTATTCTTCCCTTTGGTTTCAAAACTTGCAGAGGAAATTGCTGACAGTATCAGTCTGAACCAAAGCCAAGTTCGAATTATGGGTGCAGATGCTGCTAGTCAGCAATTAGAAAAAACAACTGTCATTATCAACTTGGTTCCAAGAGGATCGAGATTCAATCATAACACAGCTTTTTCTATATACCAGAAATTTTGGGGGAGAAAGATATCTATCAACTCTTCTTTGTTTGGTAGATATCAAGTACTAAATGTCAAATATCCAGGTCTTCCACCTTCTCCTCCGCTAGCACCTTCAAGTACTTCATCCATTAATGATGGTTTGAACACTAGCAATACTAATGCTGGAACTGCAATTAAACCATTGGGAGTTGACGTGCCAAGACGGAAAAAAGAAGGGCTTGGCAGTAACATGATCGCTGTGATTACTATTTCTTCATTCACTGCCCTTGTCATGTGTGTTGGGCTTGCTTGGCTTTGCCTGTTGAGGTACAGAGTGTCTGCACATCCACCAGCTCAAATTCCACAAAACATGATAGCCTCACCGACAAAACCATCAGGCACTGCTGGATTGATAATGGTTGGAAGTGAACCTGGTTCTTCATCCATGCCTCTCGATGCCGATCCTATGACATATATTGGTGCTGCAAAGAACTTCACCTTGAAAGATATGGAGAAATCCACAGACAACTTCGACACTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTATACAGTGGGAGTTTAGAAGATGGAAGGGATGTAGCTGTGAAGGTTCTTAAAAGACATAATCAACATGGTATTCGGGAATTCTTGGCGGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAGTTAATCGGTATCTGTACAGAGGATCAGATTCGCTGCCTGGTCTACGAATTGGTCCCTAATGGAAGTGTCGAATCACACTTACATGGCATTGACAAGTTAACCAGTCCACTTGATTGGGATGCCCGAATGAAGATTGCCCTCGGTGCTGCTCGAGGCCTAGCCTATCTGCACGAAGACTCCAATCCTCGAGTCATTCATAGAGACTTCAAAGCTAGCAACATCTTGTTGGAATATGACTTTACTCCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTGGAGGAAGGAAACAAGCACATCTCAACACATGTCATGGGAACTTTTGGTTATCTAGCTCCAGAGTATGCAATGACTGGCCACCTTCTTGTAAAGAGTGATGTATATAGCTATGGCGTTGTCCTTCTTGAGTTACTTACAGGAAGAAAGCCAGTAGACTTATCGCTTCCACCTGGACAAGAAAATCTCGTTGCTTGGGCTCGTCCACTTCTCACGAGCAAGGAGGGATTGGATGCAATCACAGATCCAGCTATTAAGTCTGATATCTCCATTGATAGCTTGGCCAGAGTAGCAGCAATTGCTTCTATGTGTGTGCAACCGGAAGTATCTCACAGACCATTTATGGGCGAGGTTGTCCAAGCCCTGAAACTCGTTTGCAACGAGTTCGAAGAAACTAACGATCCAGTTTCACGAAGTTACAGCCGAGACGAACTTCTGAGTTACATGGATAGTAAATTTGGAGGAATATCTGGTGAAATACTAAACGCTCCGGAGACCTCACACACCTTCCTTTCAGGAAAGGAGACAAATGTAGGATTATCAGCATCGGATTTGATCAGCGCATCTGCAAGATTTGAAGGACAGGAACTGGTTTCTTCTAGATGGCATTCATCAAACTCGGAACCATTGAGAACTGGAAGAAAAAAGCACTTATGGCAGAAGCTAAGAAGTTTGTCAAGAGGCAGCTTCAGTGAACATGGCTTTTCTGCAAAGCTTTGGCCTGGATTCCATTAG 2700 44.07 MSEGKKRRDLMKTAEISFEIGTLMGFRLLFLLFQIGFAVSFFSVCEAAVVLPGRLSGSHSVLRDHAVTPTSHGFGRKHHGNLYSAAPRKPFKTSSPQIHSHYKAFQSDDSSRAPSIALPPTTPAKKWGHEHTFSPSISFHKFRHSRRKFRNNAPQPTYHALPPTSSRQGPAAVSPIQSPLPSAARGRYPGPAPSPTIRPSHYYMPIPAPTTSPMGSYKKKKSMPPSQVMMLPPPPPNGDCTISCTEPLTYTPPGTPCGCVWPIQVQITLDVAVYVFFPLVSKLAEEIADSISLNQSQVRIMGADAASQQLEKTTVIINLVPRGSRFNHNTAFSIYQKFWGRKISINSSLFGRYQVLNVKYPGLPPSPPLAPSSTSSINDGLNTSNTNAGTAIKPLGVDVPRRKKEGLGSNMIAVITISSFTALVMCVGLAWLCLLRYRVSAHPPAQIPQNMIASPTKPSGTAGLIMVGSEPGSSSMPLDADPMTYIGAAKNFTLKDMEKSTDNFDTARILGEGGFGIVYSGSLEDGRDVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTSPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSLPPGQENLVAWARPLLTSKEGLDAITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNDPVSRSYSRDELLSYMDSKFGGISGEILNAPETSHTFLSGKETNVGLSASDLISASARFEGQELVSSRWHSSNSEPLRTGRKKHLWQKLRSLSRGSFSEHGFSAKLWPGFH* 900
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 21999971 22005164 + CsaV3_7G034790.1 Csa07g02390 537953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02390 899 CDD STKc_IRAK 510 778 - -
Csa07g02390 899 ProSiteProfiles Protein kinase domain profile. 504 785 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02390 899 Gene3D Transferase(Phosphotransferase) domain 1 580 799 - -
Csa07g02390 899 ProSitePatterns Protein kinases ATP-binding region signature. 510 532 IPR017441 GO:0005524
Csa07g02390 899 ProSitePatterns Serine/Threonine protein kinases active-site signature. 626 638 IPR008271 GO:0004672|GO:0006468
Csa07g02390 899 MobiDBLite consensus disorder prediction 152 203 - -
Csa07g02390 899 Pfam Protein tyrosine and serine/threonine kinase 507 777 IPR001245 GO:0004672|GO:0006468
Csa07g02390 899 Gene3D Phosphorylase Kinase; domain 1 475 579 - -
Csa07g02390 899 PANTHER OS01G0750732 PROTEIN 92 898 - -
Csa07g02390 899 MobiDBLite consensus disorder prediction 157 175 - -
Csa07g02390 899 SUPERFAMILY Protein kinase-like (PK-like) 484 777 IPR011009 -
Csa07g02390 899 MobiDBLite consensus disorder prediction 186 202 - -
Csa07g02390 899 PANTHER OS01G0750732 PROTEIN 92 898 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g02648 Csa-Chr3:24972443 Csa07g02390 Csa-Chr7:21999971 0 dispersed
Csa07g02390 Csa-Chr7:21999971 Csa03g01426 Csa-Chr3:10668107 1.77E-99 dispersed
Csa01g02799 Csa-Chr1:24642337 Csa07g02390 Csa-Chr7:21999971 9.92E-98 transposed
Csa04g00130 Csa-Chr4:737541 Csa07g02390 Csa-Chr7:21999971 2.44E-122 transposed
Csa07g00142 Csa-Chr7:1249627 Csa07g02390 Csa-Chr7:21999971 8.61E-54 transposed
Csa01g02931 Csa-Chr1:25716837 Csa07g02390 Csa-Chr7:21999971 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78516 PF07714 PK_Tyr_Ser-Thr 6.50E-47 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02390 - - csv:101219484 1770.75