Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02412 ATGCCTAGACTTCTCCTGCTTTATGCACTTTTGCCTCTCCTTCTGGTCCATGTTGATGGTCAAGATCAATCAGGTTTCATTAGCATAGATTGTGGTATACCAGAAAATTCCAATTATACTGACAGTAGAACAACGCTCAAGTATGTTTCTGATGCCGAGTTTATCGATACCGGTGAAATCCATGACATATCGCCTGAATACAGTAGAAAATTGGATCAGAGTGAGTTTAACAACGCCCAACTCAGGAATCTAAGAAGTTTTCCTGAAGGAAACAGAAGCTGTTACACCATAACACAAGGGAGTGGGGGAGAAAAGTACTTGATCAGAGTGAGTTTCATGTATGGCAACTATGATAACATAAATCGACCACCATCATTTGATTTATATCTTGGAGTTGATTATTGGGATTCAGTTCGTCTGTCAAATGCTTCTGAAATAGTAACAAAAGAACTGATACATGTCCCAACATTAGATTATATGCAAATCTGTCTAATAAACATTCAAAAAGGAGTGCCTTTCATATCAGCAATAGAGATTAGACCTCTAGATAATTCCACTTATGTGACAGTATCTGGATCCTTGATGCTCCGTCAGCGGCTAGACTATGGTTCAGAAAGCAACCGAACTGTAAGGTATCCTAATGATAGTTATGATCGGATATGGTGGTCCTCAACCATACCTGGATTGCAAAACATATCTTCTAACAGCTCAATTCAGTTGAATAAATTTGCAATTCCATCTATTGTCTTGGAAACTGCAGTTACGCCAAACCATTCCCATCAGCCCCTGAATTTTTCGTGGAATACTCGTAACAAAAGGGAACGGTTCTATATTTACATGCACTTTGCAGATATCCATAAGATGGAGAAAGGGCAGTTTAGAGCCTTCGACATCTTGGTCAATGGATTATTATGGTATGGGCAACTGGCTCCTGATTATTTGTCAACAATCACAGTCTATAGCGGCAGTGGCACCAAAGCTGCAAATCGAAGCAAAATTGAGATCTCCCTTAAAAGAAATGAAAATTCAAGTTTTCCACCCCTAATCAATGCCATTGAGATTTTTGTACAAAAACAGTTCTCACAGTTGCAAACAGACCAAGCTGAAATTGAGGCACTGCTGAACATAAAATTAGCATACAATCTGAAGAACTGGCAAGGAGATCCATGTTACCCTCAAAAATACGCGTGGACCAGTCTTCATTGCAGTTACATTAGCGACAGCCCACCGAAAATCATATCTTTGAACTTGTCGTCGAGTGGATTGGCTGGGGGAATTTCTTCTTACATATCAAATCTTACAATGCTACAATACCTGGATCTGTCCAACAATCACTTAAATGGCACGATTCCAGATTTTCTAGCTAGTCTGCCATTCTTGACAGTTCTAAACCTGGCAAACAACGATCTCTCAGGGATAATTCCGCAGACACTTATCGAAAGATCAAGAAATGAAACCATATCATTGAGTGTCGAAGGCAATCCATATCTTTGTCTATCAGAGCCCTGCAGTAAGAAGAAGAAGAAAGAGTATGTAATTCCATTAGCAGCATCACTTGGTGGAGTTACATTAGCATTGTTAACCGGAGGTGCAATTGTTTGGCGCCAAAGGAGACGAAAGAAGAAAGAAAAACAGATCTCTGGGAGTAGCAAGCAAGGAGAGACGTCACTAGTGCCAGAGAAAACAAAGCTTACCTACTCTGAAATTTTGAGTATAACTAACAACTTTGAGACTGTAATAGGGAAAGGTGGATTTGGAACAGTTTATCATGGTTACTTGCATAGCATCCAAGTTTCTGTGAAAATGCTGTCCCCTGCATCAGTTCAAGGTTACAAGCAATTTGAGGAAGAGGCACAATTACTTACAACAGTTCACCATGGAAACTTAACTTCCGTACTTGGATATTGTAATGAAGACACTCACCTAGGACTGGTTTATGAACACATGGAAAATGGAAACTTGGCAGATCTTCTATCGGAAAAGAGCAATCGTATCTTGAACTGGAAGGAGAGACTGAGAATTGCTTTGGATGCAGCACAAGGGTTAGAGTACCTTCATTTTGGGTGTCAGCCACCAATTATTCACAGAGACCTCAAGTCTACAAACATATTACTAGATAAAAACCTCCATGCCAAATTAGCTGATTTTGGCTTGTCAAAAGCATTTCATTCAGGAGATTTAGCTCAAGCAACTGCAGCTGTTGGCACCCCAGGATACCTTGATCCAGAGTATACTATAACAAACAAGTTAAATGAGAAGAGTGATGTTTATAGCTTTGGGGTGATTTTACTTGAAATTGTCACTGGTCAGCCAGCAATAACAAAAACTCAGGACAAAACCCATGTCATCAAAAGGGTTATTTCAGTGCTTAAGGAAGGAGAAATCAAGAACACAGTTGACCCAAAAATAGGATTGGACGTTAACAATAGTTCTATTTGGAAATCTATTGAGTTGGCAATAGCCTGTGTATCTTCATCTTCAACTGAGAGGCCAACCATGACCCAGGTAGTGATGGAACTGAAGCAGTGTCTGGCTATCTTGGAGAATCCTCAGGAAAATAATGGTGGAATCAGTTCCAGCCTTGTGTTGGTCCCTCTGACTTCATCATTTAGAGATCCCCAAGAAAGGTAA 2631 40.02 MPRLLLLYALLPLLLVHVDGQDQSGFISIDCGIPENSNYTDSRTTLKYVSDAEFIDTGEIHDISPEYSRKLDQSEFNNAQLRNLRSFPEGNRSCYTITQGSGGEKYLIRVSFMYGNYDNINRPPSFDLYLGVDYWDSVRLSNASEIVTKELIHVPTLDYMQICLINIQKGVPFISAIEIRPLDNSTYVTVSGSLMLRQRLDYGSESNRTVRYPNDSYDRIWWSSTIPGLQNISSNSSIQLNKFAIPSIVLETAVTPNHSHQPLNFSWNTRNKRERFYIYMHFADIHKMEKGQFRAFDILVNGLLWYGQLAPDYLSTITVYSGSGTKAANRSKIEISLKRNENSSFPPLINAIEIFVQKQFSQLQTDQAEIEALLNIKLAYNLKNWQGDPCYPQKYAWTSLHCSYISDSPPKIISLNLSSSGLAGGISSYISNLTMLQYLDLSNNHLNGTIPDFLASLPFLTVLNLANNDLSGIIPQTLIERSRNETISLSVEGNPYLCLSEPCSKKKKKEYVIPLAASLGGVTLALLTGGAIVWRQRRRKKKEKQISGSSKQGETSLVPEKTKLTYSEILSITNNFETVIGKGGFGTVYHGYLHSIQVSVKMLSPASVQGYKQFEEEAQLLTTVHHGNLTSVLGYCNEDTHLGLVYEHMENGNLADLLSEKSNRILNWKERLRIALDAAQGLEYLHFGCQPPIIHRDLKSTNILLDKNLHAKLADFGLSKAFHSGDLAQATAAVGTPGYLDPEYTITNKLNEKSDVYSFGVILLEIVTGQPAITKTQDKTHVIKRVISVLKEGEIKNTVDPKIGLDVNNSSIWKSIELAIACVSSSSTERPTMTQVVMELKQCLAILENPQENNGGISSSLVLVPLTSSFRDPQER* 877
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22148259 22154798 - CsaV3_7G035010.1 Csa07g02412 537975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02412 876 SUPERFAMILY L domain-like 391 479 - -
Csa07g02412 876 Pfam Leucine Rich repeats (2 copies) 434 473 IPR025875 -
Csa07g02412 876 Pfam Malectin-like domain 29 355 IPR024788 -
Csa07g02412 876 PANTHER OS07G0107800 PROTEIN-RELATED 10 853 - -
Csa07g02412 876 SUPERFAMILY Protein kinase-like (PK-like) 554 840 IPR011009 -
Csa07g02412 876 Gene3D - 198 359 - -
Csa07g02412 876 Gene3D Transferase(Phosphotransferase) domain 1 649 856 - -
Csa07g02412 876 SMART serkin_6 574 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02412 876 Pfam Protein tyrosine and serine/threonine kinase 576 840 IPR001245 GO:0004672|GO:0006468
Csa07g02412 876 ProSiteProfiles Leucine-rich repeat profile. 435 458 IPR001611 GO:0005515
Csa07g02412 876 CDD STKc_IRAK 580 842 - -
Csa07g02412 876 Gene3D Ribonuclease Inhibitor 368 491 IPR032675 -
Csa07g02412 876 ProSiteProfiles Protein kinase domain profile. 574 844 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02412 876 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Csa07g02412 876 Gene3D Phosphorylase Kinase; domain 1 561 648 - -
Csa07g02412 876 PANTHER PUTATIVE-RELATED 10 853 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Csa03g04111 Csa07g02412 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04111 Csa-Chr3:36024007 Csa07g02412 Csa-Chr7:22148259 0 dispersed
Csa03g04112 Csa-Chr3:36036381 Csa07g02412 Csa-Chr7:22148259 0 dispersed
Csa07g02412 Csa-Chr7:22148259 Csa07g02420 Csa-Chr7:22174989 0 dispersed
Csa07g02412 Csa-Chr7:22148259 Csa07g02414 Csa-Chr7:22156606 2.50E-20 proximal
Csa01g01248 Csa-Chr1:7756753 Csa07g02412 Csa-Chr7:22148259 1.44E-30 transposed
Csa05g00655 Csa-Chr5:4368966 Csa07g02412 Csa-Chr7:22148259 1.63E-23 transposed
Csa06g02441 Csa-Chr6:21790725 Csa07g02412 Csa-Chr7:22148259 1.09E-38 transposed
Csa03g04110 Csa-Chr3:36012252 Csa07g02412 Csa-Chr7:22148259 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78517 PF12819 Malectin_like 6.00E-106 CL0202 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02412 - - csv:101207661 1679.46