Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02421 ATGGCTGCCGTTTTAAGTCCAACGGCAATAAACCTAGATAATAACAATCTCACAGGCTCTCTTCCACCTGAGCTTACAAAAAGACAGAAAAACGGTTCACTTACATTAAGAGAAAAGCTCCAGTATATTAAGATGGGAAGACAGACTTCGAATTGCAATAGATGCAGCGCAAGACTATGGAAAATCAAATACGCAGGACTGGAGTATCTACATCATGGTTGTAAGCCACCAATAGTTCACAGGGATGTGAAAACAACAAATATCTTATTGACAGAAAATTTCAATGCCAAGCTTTCTGATTTTGGACTTTCAAAGACTTACCCAACAGATGACAAGTCCTACATGTCCACTGTTATTGTTGGCACTCCAGGTTACCTTGATCCAGAGTACTATACATCAAACAGGCTAACTGAAAAAAGTGATGTGTACGGTTTTGGAGTTTCATTGATGGAAGTAATTAGTTGCAGACCAGTAATTTTGAACACCCTAGACAGAGAAACGAATTACATAGTCAAATGGGTTCATGCCATGGTTTCTCAGGGAGACATCAAGAATATAGTTGACCCACGAATAAGAGGAGCATATGAAAGCAACTCTGTTTGGAAAGCTGCGGAATTAGCCTTGGCCTGTGTATCAGTAGACTCCAATCAAAGGCCAACGATGAATCAAGTAGTGATAGAGTTGAAGGACTGCTTGTCCATGGAGTTGAGTCAGAGATCGGAAAGCCATCCAATGGAATCAAAAGACTCCATTGAAATGATGTCCATATCAATGGTTATGAATGCCAGCCACTCTAGTCCCATGCCAAGGTGA 813 40.71 MAAVLSPTAINLDNNNLTGSLPPELTKRQKNGSLTLREKLQYIKMGRQTSNCNRCSARLWKIKYAGLEYLHHGCKPPIVHRDVKTTNILLTENFNAKLSDFGLSKTYPTDDKSYMSTVIVGTPGYLDPEYYTSNRLTEKSDVYGFGVSLMEVISCRPVILNTLDRETNYIVKWVHAMVSQGDIKNIVDPRIRGAYESNSVWKAAELALACVSVDSNQRPTMNQVVIELKDCLSMELSQRSESHPMESKDSIEMMSISMVMNASHSSPMPR* 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22179844 22184974 - CsaV3_7G035100.1 Csa07g02421 537984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02421 270 PANTHER OS07G0107800 PROTEIN-RELATED 8 49 - -
Csa07g02421 270 PANTHER PUTATIVE-RELATED 66 270 - -
Csa07g02421 270 PANTHER OS07G0107800 PROTEIN-RELATED 66 270 - -
Csa07g02421 270 Pfam Protein kinase domain 64 225 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02421 270 ProSitePatterns Serine/Threonine protein kinases active-site signature. 78 90 IPR008271 GO:0004672|GO:0006468
Csa07g02421 270 SMART serkin_6 8 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02421 270 Gene3D Transferase(Phosphotransferase) domain 1 19 255 - -
Csa07g02421 270 PANTHER PUTATIVE-RELATED 8 49 - -
Csa07g02421 270 ProSiteProfiles Protein kinase domain profile. 1 246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02421 270 SUPERFAMILY Protein kinase-like (PK-like) 65 258 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa03g04113 Csa-Chr3:36048558 Csa07g02421 Csa-Chr7:22179844 4.05E-46 dispersed
Csa07g02421 Csa-Chr7:22179844 Csa07g02424 Csa-Chr7:22189679 1.31E-93 dispersed
Csa07g02420 Csa-Chr7:22174989 Csa07g02421 Csa-Chr7:22179844 1.96E-07 tandem
Csa07g02421 Csa-Chr7:22179844 Csa07g02422 Csa-Chr7:22185089 6.55E-120 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78523 PF00069 Pkinase 7.00E-26 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02421 - - csv:101208111 416.001