Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02424 ATGAAGTCTACGGTTTCCCATGTGCTCAATCTTTTGTTCAAATTGAATGGCAGTAAATCTTCAGCAGCCAAGTCTACCTTCCCTTCCCTCCAATGGCAGCATCACATTCATTGGATACACATCCAAATGATTTTCAACCTGGACTTGTCAAACAATAATTTGACAGGACATGTGCCTGATTTCCTGTCTAGTTTGTCACACCTCAAAACTCTGAACCTAGGGAACAACAAGCTCTCAGGTCCAATTCCAGCTGAGCTTTTGAAAAGATCCAATGATGGATCACTATCATTAAGTGTGGGAGGTAACCAAAATCTGGAAGGATGTGCATCAGATCCTTGTCCAAAGAATGAGGAGAAAAAAAACAACATCATCATTCCAATTGTAGCATCAATTGGTGGATTCCTAGTTGTTGTCACAATTGTTGCAATAACCTTTTGGATCATTAAATCTCGAAAGAAACAACAAGGTAAAAATGTTGTCTCAGTGGTGGATAAGTCAGGAACCAACAGTCCGTTAGGTACTTCATTGGAGGTGAGAAGCCGACAATTTACTTATTCTGAGGTGGTGAAAATGACCAACAATTTCAAAAAAGTTCTGGGTAAAGGAGGTTTCGGGGAGGTCTACTATGGTGTCATTGACGAAATTGAAGTGGCAGTGAAGATGTTGTCTTTATCATCATCACAAGGATATCGGCAATTTCAAGCAGAGGTTACCCTTCTTATGAGAGTTCACCATAGGAACTTGACCAGCCTTGTTGGATATTTGAACGAAGAAAACCACCTTGGCCTCATTTACGAGTACATGGCGAATGGAGATTTGGCCGAACATCTTTCAGAGAGGAGTGTACGTATCATAAGCTGGGAAGATAGACTTCGAATAGCTATGGATGCAGCTCAAGGACTAGAGTACCTGCATTACGGTTGTAAGCCACCCATTGTCCACAGAGATGTGAAAACAACAAACATCTTGTTGACAGATAATTTCCAAGGCAAGCTTGCAGATTTTGGTCTTTCCAAAAGCTTCCCCACAGATGGCAACACCCACATGTCCACCGTTGTTGCTGGAACTCCTGGTTACCTTGATCCAGAGTACTACGTATCAAACAGGCTAACAGAGAAAAGCGATGTATACAGCTTTGGGATAGCTCTATTAGAGATAATAAGTTGCAAACCAGTAATATCAAGAACAGGAGATACACCACATATAGCTAAATGGGTTACGTCTTTGCTAGCGCTAGGAGATATTCAGAGCATAGTGGATCCAAGATTAGAAGGGCAGTATGAAAGAAACTCTGTTTGGAAGACGGTGGAAGTGGCAATGGCTTGTGTAGCGGCAAATTCCAGTAGAAGGCCGACGATGAGCGACGTTGTGGCGGAACTCAAAGATTGCTTAGCTACAGCATTGAGTCGGAATCATGAGAATGGTTCGCTCGAATCAACAAATTTCGGTGAAAGGAGGTCCATCTCTATAGGAATCAATGCTTCCGATTCAAGTCCTGTGGCGAGGTGA 1509 42.48 MKSTVSHVLNLLFKLNGSKSSAAKSTFPSLQWQHHIHWIHIQMIFNLDLSNNNLTGHVPDFLSSLSHLKTLNLGNNKLSGPIPAELLKRSNDGSLSLSVGGNQNLEGCASDPCPKNEEKKNNIIIPIVASIGGFLVVVTIVAITFWIIKSRKKQQGKNVVSVVDKSGTNSPLGTSLEVRSRQFTYSEVVKMTNNFKKVLGKGGFGEVYYGVIDEIEVAVKMLSLSSSQGYRQFQAEVTLLMRVHHRNLTSLVGYLNEENHLGLIYEYMANGDLAEHLSERSVRIISWEDRLRIAMDAAQGLEYLHYGCKPPIVHRDVKTTNILLTDNFQGKLADFGLSKSFPTDGNTHMSTVVAGTPGYLDPEYYVSNRLTEKSDVYSFGIALLEIISCKPVISRTGDTPHIAKWVTSLLALGDIQSIVDPRLEGQYERNSVWKTVEVAMACVAANSSRRPTMSDVVAELKDCLATALSRNHENGSLESTNFGERRSISIGINASDSSPVAR* 503
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22189679 22195314 - CsaV3_7G035130.1 Csa07g02424 537987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02424 502 Gene3D Ribonuclease Inhibitor 20 122 IPR032675 -
Csa07g02424 502 SUPERFAMILY L domain-like 42 98 - -
Csa07g02424 502 ProSitePatterns Protein kinases ATP-binding region signature. 199 220 IPR017441 GO:0005524
Csa07g02424 502 PANTHER OS07G0107800 PROTEIN-RELATED 39 502 - -
Csa07g02424 502 SUPERFAMILY Protein kinase-like (PK-like) 170 460 IPR011009 -
Csa07g02424 502 Pfam Protein tyrosine and serine/threonine kinase 195 460 IPR001245 GO:0004672|GO:0006468
Csa07g02424 502 SMART serkin_6 193 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02424 502 ProSiteProfiles Protein kinase domain profile. 193 464 IPR000719 GO:0004672|GO:0005524|GO:0006468
Csa07g02424 502 ProSitePatterns Serine/Threonine protein kinases active-site signature. 312 324 IPR008271 GO:0004672|GO:0006468
Csa07g02424 502 PANTHER PUTATIVE-RELATED 39 502 - -
Csa07g02424 502 Gene3D Transferase(Phosphotransferase) domain 1 268 483 - -
Csa07g02424 502 Gene3D Phosphorylase Kinase; domain 1 180 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa04g02196 Csa-Chr4:22755565 Csa07g02424 Csa-Chr7:22189679 2.22E-148 dispersed
Csa07g02414 Csa-Chr7:22156606 Csa07g02424 Csa-Chr7:22189679 9.82E-24 dispersed
Csa07g02421 Csa-Chr7:22179844 Csa07g02424 Csa-Chr7:22189679 1.31E-93 dispersed
Csa07g02424 Csa-Chr7:22189679 Csa07g02426 Csa-Chr7:22200864 0 dispersed
Csa07g02430 Csa-Chr7:22228678 Csa07g02424 Csa-Chr7:22189679 1.64E-116 dispersed
Csa07g02424 Csa-Chr7:22189679 Csa07g02425 Csa-Chr7:22195910 0 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
78525 PF07714 PK_Tyr_Ser-Thr 3.00E-46 CL0016 Csa PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02424 - - csv:101206211 886.715