Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Csa07g02448 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAACGGCAAATACGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTTTATCACGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGAGAGTGCCCCATTCTCTCTAATATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAATAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCGTCACGGCTACAAGCTGTGAACAGGAAGCTTACGGCTATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGCAGCTGGTGTATGAGAATGGCTATTTCCGCCAGCATACTCAGAGTACAACGCTTGGAGCTAAAGACACAAGTTGTGAACCGGTGGTAACAAGCGGTCAACACAATTTGACATCTCAGCATCCTCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCTATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCTACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCGTCGTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACAGCAAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCACGAGACTTCTGGTTGTTACGTTACACTTCTGTTTTGGAAGATGGCAGCCTTGTGATCTGTGAGAGATCACTTAAGAACACTCAGAATGGCCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGTTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCTATCATTCATATCGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTTTTGCGCCCATTGTATGAATCATCCACTGTTCTTGCTCAAAAGATGACTATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCATGAAGTTTCGCAGTCAAATGTAACAGGCTGGGGTAGACGCCCTGCAGCTCTACGTTCGCTTGGTCAGAGGCTTACCCGGGGTTTTAACGAGGCACTTAATGGGTTTAATGACGAAGGGTGGTCTGTGATGGGAAATGATGGAATGGATGATGTAACTATTCTCGTGAATTCCTCTCCTGACAAGCTAATGGGATTGAACATATCGTTTGCAAATGGATTTTCTGCCATCAGTAATGCAGTTTTATGTGCTCGAGCATCGATGCTGTTGCAGAATGTGCCTCCTGCAATTCTACTGAGGTTTCTGCGGGAGCACAGGTCAGAATGGGCAGACAACAATATTGATGCTTATTCAGCTGCTGCTGTCAAGGTTGGCCCATGGAGCTTACCAGGGTCTAGAGTTGGAAGTTTTGGGAATCAAGTAATACTTCCTCTGGCTCATACCATTGAGCACGAAGAGTTTCTAGAAGTGATTAAACTGGAAGGGATTGGCCATACTCCTGAAGATGCAATGATGCCTAGAGAAATGTTTCTACTGCAACTCTGCAGTGGAATGGATGAAAATGCTATTGGCACTTGTGCTGAACTAATATTTGCTCCAATTGATGCCTCTTTTGCTGATGACGCACCTCTTTTGCCCTCGGGGTTTCGGATCATACCACTTGATTCTGGAAAGGAAGCATCCAGCCCAAATCGCACACTTGACCTTGCTTCTGCTCTTGAAATTGGCCCTGCTGGAAATAGAACACCAAATGACTCTGTAAATTCTGGTTGTACAAGGTCTGTAATGACGATTGCATTTGAATTTGCATTTGAGAGCCACATGCAAGAGCATGTGGCATCGATGGCTCGACAATATGTACGTAGTATTATATCATCGGTTCAGAGGGTTGCATTAGCTCTCTCACCTTCTCATTTAAGTTCACATACTGGACTACGATCTCCACTTGGTACTCCTGAAGCACAGACACTTGCTCGTTGGATTTGCAATAGTTATAGGTGCTACTTGGGGGTGGAGCTGTTAAAATCTGGAAATGAAGGAGGGGAGCTTGTGCTGAAAACATTGTGGCATCATTCGGATGCAATTATGTGCTGCTCTCTAAAGGCATTGCCAGTGTTCACTTTCGCAAATCAGGCAGGCCTTGACATGCTTGAGACAACCTTAGTTGCACTTCAAGACATAACTTTGGAAAAGATATTTGATGACCATGGAAAAAAGACACTCTGCTCAGAATTTCCACAGATAATGCAACAGGGATTTGCTTGTCTTCAAGGAGGCATATGCCTTTCGAGCATGGGTCGACCTGTCTCGTACGAAAGAGCTGTGGCTTGGAAGGTGCTGAATGAAGAGGAAAATGCACACTGCATCTGTTTTATGTTTGTGAACTGGTCCTTTGTCTGA 2514 46.18 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTLGAKDTSCEPVVTSGQHNLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRSLGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGIGHTPEDAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRTPNDSVNSGCTRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHTGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV* 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
7 22354861 22361965 - CsaV3_7G035370.1 Csa07g02448 538011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Csa07g02448 837 Pfam START domain 161 369 IPR002913 GO:0008289
Csa07g02448 837 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677
Csa07g02448 837 MobiDBLite consensus disorder prediction 128 154 - -
Csa07g02448 837 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Csa07g02448 837 Pfam MEKHLA domain 694 836 IPR013978 -
Csa07g02448 837 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289
Csa07g02448 837 Gene3D - 195 379 IPR023393 -
Csa07g02448 837 Gene3D - 10 83 - -
Csa07g02448 837 SMART HOX_1 14 80 IPR001356 GO:0003677
Csa07g02448 837 CDD START_ArGLABRA2_like 155 371 - -
Csa07g02448 837 MobiDBLite consensus disorder prediction 128 150 - -
Csa07g02448 837 Pfam Homeodomain 17 75 IPR001356 GO:0003677
Csa07g02448 837 SUPERFAMILY Bet v1-like 160 371 - -
Csa07g02448 837 CDD bZIP 69 108 - -
Csa07g02448 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 837 IPR044830 GO:0003700
Csa07g02448 837 CDD homeodomain 17 77 IPR001356 GO:0003677
Csa07g02448 837 Coils Coil 72 113 - -
Csa07g02448 837 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 837 - -
Csa07g02448 837 SMART START_1 160 370 IPR002913 GO:0008289
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Csa01g02627 Csa-Chr1:23252566 Csa07g02448 Csa-Chr7:22354861 0 dispersed
Csa06g01195 Csa-Chr6:10113736 Csa07g02448 Csa-Chr7:22354861 0 dispersed
Csa06g03845 Csa-Chr6:30511732 Csa07g02448 Csa-Chr7:22354861 0 dispersed
Csa07g02448 Csa-Chr7:22354861 Csa06g03532 Csa-Chr6:28760373 5.22E-26 dispersed
Csa03g04545 Csa-Chr3:39619913 Csa07g02448 Csa-Chr7:22354861 0 transposed
Csa03g02389 Csa-Chr3:21927557 Csa07g02448 Csa-Chr7:22354861 2.23E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32395 PF01852 START 2.80E-54 CL0209 Csa TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Csa07g02448 K09338 - csv:101213106 1687.16