Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0037 | ATGGATTCTGAAGACGATATTCATTATTCCACCGACGCTGAGTCCGTTGACGATGATTGCGATTTTTACAGCGGCGATATGGAGATGGGTATGGATTATTACAGCGACGATTGTGGCGATGCTGATGCTGAAGATTTTGTCGACGACGATAACGATGATTATTATACCGTGGAACCCCGTCGACGGGAGCAAAACTACACCATATTAAATGATTCAGATATACGACAACGGCAAGAGGATGACGTTACAAGAGTTTCTACTGTACTTTCTATATCACGTGTAGATTCCATGAGCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTGCATGATGAATGGTTTGCTGATGAAAATCAAGTAAGGAAACAAGTTGGCTTGTTGGAAGCACCTGTTGTACGAGTCTCGAATACTAGAGAACGTACTTGTGGGATCTGTTTTGAGTCCTATGCTCACAATAGAATTAAGTCAGCAGCCTGTGGTCATCCTTTCTGTGCCTCATGCTGGGGAGGGTACATTAGCACATCGATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCCTCTTGTAGTGCCGTGGTTGATCAAGATATGATTAATTCATTGGTCTCTGATGAAGACAGGGAGAGATATTCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAATAAAAAGACTAAATGGTGCCCTGCTCCTGGTTGTGAGTATGCTGTTCTCTTTGATGCTGGTAATGGAAACTTTGATGTTGCTTGCTCCTGCACATATGGCTTTTGCTGGAATTGCACAGAGGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAGTGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACATGCACACCTCCATGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCAGATCACGGTGAAAGAACCGGTGGTTTCTATGCTTGTAATCGTTATGAGGTAGCTAAGCAAGATGGCGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAAAGATACACTCATTATTACGAGCGTTGGGCAAGTAATCAAACGTCTAGGCAAAAAGCAATAGCAGATCTGCATCAAATGCAGGATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATTACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTATTAAAATGGACTTATGCATATGGATATTACCTACCAGATCAGGAGCATGCCAAGAGACAGTTTTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTTCATCAATGTGCTGAAAAAGAACTACTACAGTTCCTCAGTGCAGAGGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAACTTGCCGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTTAGGGCATTAGAGAATGGCCTTTCGGATGTGAACTCCCAGTCCCATGGAGCATCCAGTGGCACAGCGAGCTCAAAAACTACAGCCGGAAGTAGTAAAGGCAGAAACGGACGGGGTAAGGGAGTCAGTCGAACCAGCAGTTCCAGCAGAAATGCTGCGGATAGTACCACTCATTGGTCTTGTGATCACTGTACCTTTGTGAACACTAGATCTGCTACCACGTGCGAGATGTGCCATCAATGCCATTGA | 1791 | 43.61 | MDSEDDIHYSTDAESVDDDCDFYSGDMEMGMDYYSDDCGDADAEDFVDDDNDDYYTVEPRRREQNYTILNDSDIRQRQEDDVTRVSTVLSISRVDSMSLLRHFNWSVTKVHDEWFADENQVRKQVGLLEAPVVRVSNTRERTCGICFESYAHNRIKSAACGHPFCASCWGGYISTSINDGPGCLTLRCPDPSCSAVVDQDMINSLVSDEDRERYSRYLLRSYVEDNKKTKWCPAPGCEYAVLFDAGNGNFDVACSCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQDVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPDQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSQSHGASSGTASSKTTAGSSKGRNGRGKGVSRTSSSSRNAADSTTHWSCDHCTFVNTRSATTCEMCHQCH | 596 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 304267 | 312515 | + | evm.model.ptg000016l.1123 | HCH10g0037 | 552110 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0037 | 596 | CDD | Rcat_RBR_ARI7-like | 297 | 351 | - | - | |
HCH10g0037 | 596 | SMART | ibrneu5 | 212 | 274 | IPR002867 | GO:0008270(InterPro) | |
HCH10g0037 | 596 | SMART | ibrneu5 | 278 | 348 | IPR002867 | GO:0008270(InterPro) | |
HCH10g0037 | 596 | MobiDBLite | consensus disorder prediction | 525 | 570 | - | - | |
HCH10g0037 | 596 | SUPERFAMILY | RING/U-box | 293 | 341 | - | - | |
HCH10g0037 | 596 | Pfam | Ariadne domain | 361 | 523 | IPR045840 | - | |
HCH10g0037 | 596 | Coils | Coil | 360 | 380 | - | - | |
HCH10g0037 | 596 | ProSiteProfiles | TRIAD supradomain profile. | 139 | 352 | IPR044066 | - | |
HCH10g0037 | 596 | SUPERFAMILY | RING/U-box | 139 | 221 | - | - | |
HCH10g0037 | 596 | SMART | zf_4 | 571 | 595 | IPR001876 | - | |
HCH10g0037 | 596 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 137 | 227 | IPR013083 | - | |
HCH10g0037 | 596 | Gene3D | - | 270 | 525 | - | - | |
HCH10g0037 | 596 | SUPERFAMILY | RING/U-box | 212 | 281 | - | - | |
HCH10g0037 | 596 | ProSitePatterns | Zinc finger RanBP2-type signature. | 573 | 592 | IPR001876 | - | |
HCH10g0037 | 596 | ProSiteProfiles | Zinc finger RING-type profile. | 143 | 189 | IPR001841 | - | |
HCH10g0037 | 596 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 88 | 399 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
HCH10g0037 | 596 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 76 | 115 | IPR048962 | - | |
HCH10g0037 | 596 | Pfam | IBR domain | 296 | 336 | - | - | |
HCH10g0037 | 596 | CDD | BRcat_RBR_ANKIB1 | 219 | 283 | - | - | |
HCH10g0037 | 596 | FunFam | RBR-type E3 ubiquitin transferase | 275 | 525 | - | - | |
HCH10g0037 | 596 | SUPERFAMILY | Ran binding protein zinc finger-like | 569 | 594 | IPR036443 | - | |
HCH10g0037 | 596 | Pfam | IBR domain, a half RING-finger domain | 212 | 274 | IPR002867 | GO:0008270(InterPro) | |
HCH10g0037 | 596 | FunFam | RBR-type E3 ubiquitin transferase | 137 | 226 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0037 | HCH-Chr10:304267 | HCH10g0595 | HCH-Chr10:4806311 | 6.50E-255 | dispersed | |
HCH10g0037 | HCH-Chr10:304267 | HCH4g0689 | HCH-Chr4:4477074 | 8.70E-143 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0037 | K11968 | - | csv:101223037 | 1063.14 |