Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0037 ATGGATTCTGAAGACGATATTCATTATTCCACCGACGCTGAGTCCGTTGACGATGATTGCGATTTTTACAGCGGCGATATGGAGATGGGTATGGATTATTACAGCGACGATTGTGGCGATGCTGATGCTGAAGATTTTGTCGACGACGATAACGATGATTATTATACCGTGGAACCCCGTCGACGGGAGCAAAACTACACCATATTAAATGATTCAGATATACGACAACGGCAAGAGGATGACGTTACAAGAGTTTCTACTGTACTTTCTATATCACGTGTAGATTCCATGAGCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTGCATGATGAATGGTTTGCTGATGAAAATCAAGTAAGGAAACAAGTTGGCTTGTTGGAAGCACCTGTTGTACGAGTCTCGAATACTAGAGAACGTACTTGTGGGATCTGTTTTGAGTCCTATGCTCACAATAGAATTAAGTCAGCAGCCTGTGGTCATCCTTTCTGTGCCTCATGCTGGGGAGGGTACATTAGCACATCGATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCCTCTTGTAGTGCCGTGGTTGATCAAGATATGATTAATTCATTGGTCTCTGATGAAGACAGGGAGAGATATTCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAATAAAAAGACTAAATGGTGCCCTGCTCCTGGTTGTGAGTATGCTGTTCTCTTTGATGCTGGTAATGGAAACTTTGATGTTGCTTGCTCCTGCACATATGGCTTTTGCTGGAATTGCACAGAGGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAGTGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACATGCACACCTCCATGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCAGATCACGGTGAAAGAACCGGTGGTTTCTATGCTTGTAATCGTTATGAGGTAGCTAAGCAAGATGGCGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAAAGATACACTCATTATTACGAGCGTTGGGCAAGTAATCAAACGTCTAGGCAAAAAGCAATAGCAGATCTGCATCAAATGCAGGATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATTACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTATTAAAATGGACTTATGCATATGGATATTACCTACCAGATCAGGAGCATGCCAAGAGACAGTTTTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTTCATCAATGTGCTGAAAAAGAACTACTACAGTTCCTCAGTGCAGAGGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAACTTGCCGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTTAGGGCATTAGAGAATGGCCTTTCGGATGTGAACTCCCAGTCCCATGGAGCATCCAGTGGCACAGCGAGCTCAAAAACTACAGCCGGAAGTAGTAAAGGCAGAAACGGACGGGGTAAGGGAGTCAGTCGAACCAGCAGTTCCAGCAGAAATGCTGCGGATAGTACCACTCATTGGTCTTGTGATCACTGTACCTTTGTGAACACTAGATCTGCTACCACGTGCGAGATGTGCCATCAATGCCATTGA 1791 43.61 MDSEDDIHYSTDAESVDDDCDFYSGDMEMGMDYYSDDCGDADAEDFVDDDNDDYYTVEPRRREQNYTILNDSDIRQRQEDDVTRVSTVLSISRVDSMSLLRHFNWSVTKVHDEWFADENQVRKQVGLLEAPVVRVSNTRERTCGICFESYAHNRIKSAACGHPFCASCWGGYISTSINDGPGCLTLRCPDPSCSAVVDQDMINSLVSDEDRERYSRYLLRSYVEDNKKTKWCPAPGCEYAVLFDAGNGNFDVACSCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQDVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPDQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSQSHGASSGTASSKTTAGSSKGRNGRGKGVSRTSSSSRNAADSTTHWSCDHCTFVNTRSATTCEMCHQCH 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 304267 312515 + evm.model.ptg000016l.1123 HCH10g0037 552110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0037 596 CDD Rcat_RBR_ARI7-like 297 351 - -
HCH10g0037 596 SMART ibrneu5 212 274 IPR002867 GO:0008270(InterPro)
HCH10g0037 596 SMART ibrneu5 278 348 IPR002867 GO:0008270(InterPro)
HCH10g0037 596 MobiDBLite consensus disorder prediction 525 570 - -
HCH10g0037 596 SUPERFAMILY RING/U-box 293 341 - -
HCH10g0037 596 Pfam Ariadne domain 361 523 IPR045840 -
HCH10g0037 596 Coils Coil 360 380 - -
HCH10g0037 596 ProSiteProfiles TRIAD supradomain profile. 139 352 IPR044066 -
HCH10g0037 596 SUPERFAMILY RING/U-box 139 221 - -
HCH10g0037 596 SMART zf_4 571 595 IPR001876 -
HCH10g0037 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 227 IPR013083 -
HCH10g0037 596 Gene3D - 270 525 - -
HCH10g0037 596 SUPERFAMILY RING/U-box 212 281 - -
HCH10g0037 596 ProSitePatterns Zinc finger RanBP2-type signature. 573 592 IPR001876 -
HCH10g0037 596 ProSiteProfiles Zinc finger RING-type profile. 143 189 IPR001841 -
HCH10g0037 596 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 88 399 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
HCH10g0037 596 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 76 115 IPR048962 -
HCH10g0037 596 Pfam IBR domain 296 336 - -
HCH10g0037 596 CDD BRcat_RBR_ANKIB1 219 283 - -
HCH10g0037 596 FunFam RBR-type E3 ubiquitin transferase 275 525 - -
HCH10g0037 596 SUPERFAMILY Ran binding protein zinc finger-like 569 594 IPR036443 -
HCH10g0037 596 Pfam IBR domain, a half RING-finger domain 212 274 IPR002867 GO:0008270(InterPro)
HCH10g0037 596 FunFam RBR-type E3 ubiquitin transferase 137 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0037 HCH-Chr10:304267 HCH10g0595 HCH-Chr10:4806311 6.50E-255 dispersed
HCH10g0037 HCH-Chr10:304267 HCH4g0689 HCH-Chr4:4477074 8.70E-143 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0037 K11968 - csv:101223037 1063.14