Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0037 ATGGATTCTGAAGACGATATTCATTATTCCACCGACGCTGAGTCCGTTGACGATGATTGCGATTTTTACAGCGGCGATATGGAGATGGGTATGGATTATTACAGCGACGATTGTGGCGATGCTGATGCTGAAGATTTTGTCGACGACGATAACGATGATTATTATACCGTGGAACCCCGTCGACGGGAGCAAAACTACACCATATTAAATGATTCAGATATACGACAACGGCAAGAGGATGACGTTACAAGAGTTTCTACTGTACTTTCTATATCACGTGTAGATTCCATGAGCTTACTCCGCCACTTCAATTGGAGTGTTACTAAAGTGCATGATGAATGGTTTGCTGATGAAAATCAAGTAAGGAAACAAGTTGGCTTGTTGGAAGCACCTGTTGTACGAGTCTCGAATACTAGAGAACGTACTTGTGGGATCTGTTTTGAGTCCTATGCTCACAATAGAATTAAGTCAGCAGCCTGTGGTCATCCTTTCTGTGCCTCATGCTGGGGAGGGTACATTAGCACATCGATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCCTCTTGTAGTGCCGTGGTTGATCAAGATATGATTAATTCATTGGTCTCTGATGAAGACAGGGAGAGATATTCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAATAAAAAGACTAAATGGTGCCCTGCTCCTGGTTGTGAGTATGCTGTTCTCTTTGATGCTGGTAATGGAAACTTTGATGTTGCTTGCTCCTGCACATATGGCTTTTGCTGGAATTGCACAGAGGAAGCTCACCGTCCTGTAGATTGTGCTACTGTGGAAAAGTGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAACCAAGGGTGCATGCACATGACATGCACACCTCCATGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCAGATCACGGTGAAAGAACCGGTGGTTTCTATGCTTGTAATCGTTATGAGGTAGCTAAGCAAGATGGCGTGTATGATGAGGCTGAGAAAAGAAGAGAGATGGCGAAGAATTCTTTGGAAAGATACACTCATTATTACGAGCGTTGGGCAAGTAATCAAACGTCTAGGCAAAAAGCAATAGCAGATCTGCATCAAATGCAGGATGTGCATATTGAGAAGCTCAGTGATATACACTGCACTCCTGAGTCTCAGCTAAAGTTCATTACAGAGGCTTGGTTACAGATAATTGAATGTAGACGAGTATTAAAATGGACTTATGCATATGGATATTACCTACCAGATCAGGAGCATGCCAAGAGACAGTTTTTTGAGTACTTGCAAGGTGAGGCTGAGTCTGGATTAGAAAGGCTTCATCAATGTGCTGAAAAAGAACTACTACAGTTCCTCAGTGCAGAGGGTCCATCAAAAGAATTTAATGACTTCCGCACAAAACTTGCCGGTCTGACCAGTGTTACTCGAAATTACTTTGAGAATCTGGTTAGGGCATTAGAGAATGGCCTTTCGGATGTGAACTCCCAGTCCCATGGAGCATCCAGTGGCACAGCGAGCTCAAAAACTACAGCCGGAAGTAGTAAAGGCAGAAACGGACGGGGTAAGGGAGTCAGTCGAACCAGCAGTTCCAGCAGAAATGCTGCGGATAGTACCACTCATTGGTCTTGTGATCACTGTACCTTTGTGAACACTAGATCTGCTACCACGTGCGAGATGTGCCATCAATGCCATTGA 1791 43.61 MDSEDDIHYSTDAESVDDDCDFYSGDMEMGMDYYSDDCGDADAEDFVDDDNDDYYTVEPRRREQNYTILNDSDIRQRQEDDVTRVSTVLSISRVDSMSLLRHFNWSVTKVHDEWFADENQVRKQVGLLEAPVVRVSNTRERTCGICFESYAHNRIKSAACGHPFCASCWGGYISTSINDGPGCLTLRCPDPSCSAVVDQDMINSLVSDEDRERYSRYLLRSYVEDNKKTKWCPAPGCEYAVLFDAGNGNFDVACSCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKAIADLHQMQDVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPDQEHAKRQFFEYLQGEAESGLERLHQCAEKELLQFLSAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSQSHGASSGTASSKTTAGSSKGRNGRGKGVSRTSSSSRNAADSTTHWSCDHCTFVNTRSATTCEMCHQCH 596
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 304267 312515 + evm.model.ptg000016l.1123 HCH10g0037 552110

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0037 596 CDD Rcat_RBR_ARI7-like 297 351 - -
HCH10g0037 596 SMART ibrneu5 212 274 IPR002867 GO:0008270(InterPro)
HCH10g0037 596 SMART ibrneu5 278 348 IPR002867 GO:0008270(InterPro)
HCH10g0037 596 MobiDBLite consensus disorder prediction 525 570 - -
HCH10g0037 596 SUPERFAMILY RING/U-box 293 341 - -
HCH10g0037 596 Pfam Ariadne domain 361 523 IPR045840 -
HCH10g0037 596 Coils Coil 360 380 - -
HCH10g0037 596 ProSiteProfiles TRIAD supradomain profile. 139 352 IPR044066 -
HCH10g0037 596 SUPERFAMILY RING/U-box 139 221 - -
HCH10g0037 596 SMART zf_4 571 595 IPR001876 -
HCH10g0037 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 137 227 IPR013083 -
HCH10g0037 596 Gene3D - 270 525 - -
HCH10g0037 596 SUPERFAMILY RING/U-box 212 281 - -
HCH10g0037 596 ProSitePatterns Zinc finger RanBP2-type signature. 573 592 IPR001876 -
HCH10g0037 596 ProSiteProfiles Zinc finger RING-type profile. 143 189 IPR001841 -
HCH10g0037 596 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 88 399 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
HCH10g0037 596 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 76 115 IPR048962 -
HCH10g0037 596 Pfam IBR domain 296 336 - -
HCH10g0037 596 CDD BRcat_RBR_ANKIB1 219 283 - -
HCH10g0037 596 FunFam RBR-type E3 ubiquitin transferase 275 525 - -
HCH10g0037 596 SUPERFAMILY Ran binding protein zinc finger-like 569 594 IPR036443 -
HCH10g0037 596 Pfam IBR domain, a half RING-finger domain 212 274 IPR002867 GO:0008270(InterPro)
HCH10g0037 596 FunFam RBR-type E3 ubiquitin transferase 137 226 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0037 K11968 - - csv:101223037 1063.14
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0037 HCH-Chr10:304267 HCH10g0595 HCH-Chr10:4806311 6.50E-255 dispersed
HCH10g0037 HCH-Chr10:304267 HCH4g0689 HCH-Chr4:4477074 8.70E-143 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH2g0414 . 164 595 ARIADNE family AT4G34370 71.1 2.6e-181 631.7
HCH2g0414 . 58 542 ARIADNE family AT2G16090 76.4 6.5e-221 763.5
HCH2g0414 . 36 543 ARIADNE family AT3G27710 61.7 2.7e-183 638.6
HCH2g0414 . 44 523 ARIADNE family AT3G27720 53.3 8.0e-142 500.7
HCH10g0595 . 14 541 ARIADNE family AT1G05890 65.1 8.5e-223 770.0
HCH10g0037 . 64 543 ARIADNE family AT1G05890 72.5 9.1e-217 750.0
HCH4g0690 . 39 497 ARIADNE family AT1G05890 51.2 8.2e-141 497.7
HCH4g0689 . 39 499 ARIADNE family AT1G05890 51.7 1.4e-140 496.9
HCH10g0595 . 20 596 ARIADNE family AT1G65430 73.5 4.3e-264 907.1
HCH10g0037 . 16 593 ARIADNE family AT1G65430 69.4 7.6e-245 843.2
HCH10g0595 . 50 460 ARIADNE family AT2G31780 56.9 8.8e-148 520.4
HCH10g0037 . 51 457 ARIADNE family AT2G31780 56.7 1.5e-144 509.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72