Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0050 ATGAAAATTCAGTGTGATGTCTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCTGATGAAGCTGCACTTTGTGCTAAATGTGATGTTGAAGTTCATGCAGCAAATAAGCTTGCTAGCAAGCATCAGAGGCTTCTTCTTCAATGCCTCTCCCCCAAACTCCCTAAATGTGACATATGCCAAGACAAGGCTGCTTTCATTTTCTGTGTTGAAGACAGAGCACTCTTTTGTCAAGATTGCGATGAACCAATTCACTCAACCGGTAGTCTTTCAGCAAATCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCCTGAGCTCAAGTTGCACGAAGGAAACTGACAAGGGCAAGATGGAGCCTCCCAATCCAAAGAATCCTCAAGTACCTGCTAAAATGCCTTCACAACAAGCTTCAAGCTTCACATCTCCATGGGCTGTTGATGACTTCCTACATTTTTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAGCAACTCGAATTTGGAGAACTTGAATGGCTAGCAGATATTGGTCTCTTTGGTGAGCAGGTTCCTCAAGAGGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACTTCGTATTCAGGCAGCACAGTCGCATGCAGACCTACGAAATCAAGCATGTCATACAAAAAGCCTAGGATCGAACTCATACATGATGACGAGGAGTTTTTCACCGTTCCTGATCTTGGATGA 717 45.05 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSPKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVALSSSCTKETDKGKMEPPNPKNPQVPAKMPSQQASSFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLADIGLFGEQVPQEALAAAEVPELPTSYSGSTVACRPTKSSMSYKKPRIELIHDDEEFFTVPDLG 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 432060 434268 - evm.model.ptg000016l.1110 HCH10g0050 552123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0050 238 CDD Bbox1_BBX-like 5 47 IPR049808 -
HCH10g0050 238 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 MobiDBLite consensus disorder prediction 112 136 - -
HCH10g0050 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
HCH10g0050 238 Gene3D Classic Zinc Finger 1 92 - -
HCH10g0050 238 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 CDD Bbox1_BBX-like 56 98 IPR049808 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0050 HCH-Chr10:432060 HCH6g0619 HCH-Chr6:37204411 3.50E-34 dispersed
HCH10g0050 HCH-Chr10:432060 HCH4g0768 HCH-Chr4:4955398 1.00E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32399 PF00643 zf-B_box 4.50E-08 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0050 - - - 0.0