Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0050 ATGAAAATTCAGTGTGATGTCTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCTGATGAAGCTGCACTTTGTGCTAAATGTGATGTTGAAGTTCATGCAGCAAATAAGCTTGCTAGCAAGCATCAGAGGCTTCTTCTTCAATGCCTCTCCCCCAAACTCCCTAAATGTGACATATGCCAAGACAAGGCTGCTTTCATTTTCTGTGTTGAAGACAGAGCACTCTTTTGTCAAGATTGCGATGAACCAATTCACTCAACCGGTAGTCTTTCAGCAAATCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCCTGAGCTCAAGTTGCACGAAGGAAACTGACAAGGGCAAGATGGAGCCTCCCAATCCAAAGAATCCTCAAGTACCTGCTAAAATGCCTTCACAACAAGCTTCAAGCTTCACATCTCCATGGGCTGTTGATGACTTCCTACATTTTTCTGATCTTGAGTCCTCTGACAAGCAGAAAGAGCAACTCGAATTTGGAGAACTTGAATGGCTAGCAGATATTGGTCTCTTTGGTGAGCAGGTTCCTCAAGAGGCTTTAGCAGCTGCTGAAGTTCCTGAGCTTCCTACTTCGTATTCAGGCAGCACAGTCGCATGCAGACCTACGAAATCAAGCATGTCATACAAAAAGCCTAGGATCGAACTCATACATGATGACGAGGAGTTTTTCACCGTTCCTGATCTTGGATGA 717 45.05 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSPKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVALSSSCTKETDKGKMEPPNPKNPQVPAKMPSQQASSFTSPWAVDDFLHFSDLESSDKQKEQLEFGELEWLADIGLFGEQVPQEALAAAEVPELPTSYSGSTVACRPTKSSMSYKKPRIELIHDDEEFFTVPDLG 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 432060 434268 - evm.model.ptg000016l.1110 HCH10g0050 552123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0050 238 CDD Bbox1_BBX-like 5 47 IPR049808 -
HCH10g0050 238 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 MobiDBLite consensus disorder prediction 112 136 - -
HCH10g0050 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
HCH10g0050 238 Gene3D Classic Zinc Finger 1 92 - -
HCH10g0050 238 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
HCH10g0050 238 CDD Bbox1_BBX-like 56 98 IPR049808 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0050 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0050 HCH-Chr10:432060 HCH6g0619 HCH-Chr6:37204411 3.50E-34 dispersed
HCH10g0050 HCH-Chr10:432060 HCH4g0768 HCH-Chr4:4955398 1.00E-30 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH8g1527 . 5 392 Orphan Transcription Factor Family AT5G61850 66.1 1.4e-123 439.9
HCH10g0050 . 1 167 Orphan Transcription Factor Family AT1G06040 69.0 8.6e-62 233.4
HCH6g0619 . 1 109 Orphan Transcription Factor Family AT1G06040 65.1 5.6e-37 151.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32399 PF00643 zf-B_box 4.50E-08 No_clan HCH TF