Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0052 | ATGGAAAAGGACAAGGCTCAAGCTCAGGGTGGAGGGTTTTTGCCTCCTTCAGGTCGTTATTCAGGTTTTGTGTCTACTGGAAATAGTTTAAATGTAAAATCTGAGCCATCGTTATCATCAACGTCGTTACCTCCAATGGCACCAGCCGGTGTTACTTCTGAGTCTGGTCATTTTGGTCATGGAATTTCGGGTGGTTCGAATTCTTTCAGTCATGATATAAGTCAAATGCCGGATAACCCACGGAGGAATATGGGTCATAGACGTGCACATTCGGAAATTCTAACTCTTCCTGATGATATTAGCTTTGATAGTGACCTTGGTATTGTGGGTGGTGCTGATGGACCTTCATTTTCTGATGATACTGAGGAAGATCTGTTGTCTATGTATCTTGATATGGATAAGTTTAATTCGTCGTCGGCTACATCATCGCTCCAAATTGGTGAGCCTTCGAATTCGGCAGGTGTAGCCCAGGTCTCAGCATCTGCATTTTCTTCTGCTGGAAATGTTAATGTTGGTCTCAGTGAGAGGCCTAGAGTGAGGCATCAGCATAGCCAATCTATGGATGGGTCGTCAACTATCAACACAGAAATGCTTGTTTCAGGCTCTGAAGATGTCTCGGCAGCTGATTCCAAGAAAGCTATGTCAGCTTCTAAACTTGCAGAGCTTGCCTTAATTGATCCCAAGCGTGCAAAGAGGATCTGGGCTAATAGGCAGTCAGCTGCTAGATCCAAAGAAAGAAAGATGCGTTATATTTCTGAGCTTGAACGGAAAGTGCAGACTCTGCAAACAGAAGCGACTTCTTTATCTGCCCAATTGACCCTCTTGCAGAGAGATACAAATGGTCTGACAGCAGAAAATAGTGAACTTAAACTGCGGTTGCAAACGATGGAGCAACAGGTTCATTTGCAAGATGCTTTGAATGAAGCACTCAAAGAGGAAATTCAGCATCTGAAAGTGCTAACAGGCCAGGCTATGCAGAATGGACCAGTGATGAACTATGCTTCTTTCGGAGCAGGCCAACAATTTTATCCAAACAATCATGCTATGCATACCCTTTTGACTACTCAGCAGTTTCAGCAGCTCCAGATACATTCTCAAAAGCATCAGCACCAGTTTCAGCAGCATCAGTTGCATCAACTTCAGCAACAACAACAAGAACAACAGCAGCAACAAGTGGTGGGCGAATTGAGATCGAGAGGATCCTCATCGTCTTTGAACCAACAAAATGACAACATAACAGGCGCAAATCCTCCAACAAAGGATTGTTGA | 1269 | 43.97 | MEKDKAQAQGGGFLPPSGRYSGFVSTGNSLNVKSEPSLSSTSLPPMAPAGVTSESGHFGHGISGGSNSFSHDISQMPDNPRRNMGHRRAHSEILTLPDDISFDSDLGIVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSSLQIGEPSNSAGVAQVSASAFSSAGNVNVGLSERPRVRHQHSQSMDGSSTINTEMLVSGSEDVSAADSKKAMSASKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMQNGPVMNYASFGAGQQFYPNNHAMHTLLTTQQFQQLQIHSQKHQHQFQQHQLHQLQQQQQEQQQQQVVGELRSRGSSSSLNQQNDNITGANPPTKDC | 422 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 437899 | 440823 | - | evm.model.ptg000016l.1108 | HCH10g0052 | 552125 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0052 | 422 | Coils | Coil | 244 | 313 | - | - | |
HCH10g0052 | 422 | MobiDBLite | consensus disorder prediction | 21 | 48 | - | - | |
HCH10g0052 | 422 | CDD | bZIP_plant_RF2 | 229 | 278 | IPR044759 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0052 | 422 | Gene3D | - | 227 | 281 | - | - | |
HCH10g0052 | 422 | MobiDBLite | consensus disorder prediction | 366 | 422 | - | - | |
HCH10g0052 | 422 | SMART | brlzneu | 224 | 288 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0052 | 422 | FunFam | probable transcription factor PosF21 | 227 | 280 | - | - | |
HCH10g0052 | 422 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 70 | 398 | - | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
HCH10g0052 | 422 | Pfam | bZIP transcription factor | 228 | 282 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0052 | 422 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 226 | 289 | IPR004827 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0052 | 422 | SUPERFAMILY | Leucine zipper domain | 228 | 279 | IPR046347 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
HCH10g0052 | 422 | Coils | Coil | 370 | 390 | - | - | |
HCH10g0052 | 422 | MobiDBLite | consensus disorder prediction | 1 | 61 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0052 | HCH-Chr10:437899 | HCH1g0287 | HCH-Chr1:45381096 | 2.90E-47 | dispersed | |
HCH10g0052 | HCH-Chr10:437899 | HCH12g1439 | HCH-Chr12:38690895 | 4.30E-43 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32400 | PF00170 | bZIP_1 | 9.50E-09 | CL0018 | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0052 | - | - | - | 0.0 |