Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0052 ATGGAAAAGGACAAGGCTCAAGCTCAGGGTGGAGGGTTTTTGCCTCCTTCAGGTCGTTATTCAGGTTTTGTGTCTACTGGAAATAGTTTAAATGTAAAATCTGAGCCATCGTTATCATCAACGTCGTTACCTCCAATGGCACCAGCCGGTGTTACTTCTGAGTCTGGTCATTTTGGTCATGGAATTTCGGGTGGTTCGAATTCTTTCAGTCATGATATAAGTCAAATGCCGGATAACCCACGGAGGAATATGGGTCATAGACGTGCACATTCGGAAATTCTAACTCTTCCTGATGATATTAGCTTTGATAGTGACCTTGGTATTGTGGGTGGTGCTGATGGACCTTCATTTTCTGATGATACTGAGGAAGATCTGTTGTCTATGTATCTTGATATGGATAAGTTTAATTCGTCGTCGGCTACATCATCGCTCCAAATTGGTGAGCCTTCGAATTCGGCAGGTGTAGCCCAGGTCTCAGCATCTGCATTTTCTTCTGCTGGAAATGTTAATGTTGGTCTCAGTGAGAGGCCTAGAGTGAGGCATCAGCATAGCCAATCTATGGATGGGTCGTCAACTATCAACACAGAAATGCTTGTTTCAGGCTCTGAAGATGTCTCGGCAGCTGATTCCAAGAAAGCTATGTCAGCTTCTAAACTTGCAGAGCTTGCCTTAATTGATCCCAAGCGTGCAAAGAGGATCTGGGCTAATAGGCAGTCAGCTGCTAGATCCAAAGAAAGAAAGATGCGTTATATTTCTGAGCTTGAACGGAAAGTGCAGACTCTGCAAACAGAAGCGACTTCTTTATCTGCCCAATTGACCCTCTTGCAGAGAGATACAAATGGTCTGACAGCAGAAAATAGTGAACTTAAACTGCGGTTGCAAACGATGGAGCAACAGGTTCATTTGCAAGATGCTTTGAATGAAGCACTCAAAGAGGAAATTCAGCATCTGAAAGTGCTAACAGGCCAGGCTATGCAGAATGGACCAGTGATGAACTATGCTTCTTTCGGAGCAGGCCAACAATTTTATCCAAACAATCATGCTATGCATACCCTTTTGACTACTCAGCAGTTTCAGCAGCTCCAGATACATTCTCAAAAGCATCAGCACCAGTTTCAGCAGCATCAGTTGCATCAACTTCAGCAACAACAACAAGAACAACAGCAGCAACAAGTGGTGGGCGAATTGAGATCGAGAGGATCCTCATCGTCTTTGAACCAACAAAATGACAACATAACAGGCGCAAATCCTCCAACAAAGGATTGTTGA 1269 43.97 MEKDKAQAQGGGFLPPSGRYSGFVSTGNSLNVKSEPSLSSTSLPPMAPAGVTSESGHFGHGISGGSNSFSHDISQMPDNPRRNMGHRRAHSEILTLPDDISFDSDLGIVGGADGPSFSDDTEEDLLSMYLDMDKFNSSSATSSLQIGEPSNSAGVAQVSASAFSSAGNVNVGLSERPRVRHQHSQSMDGSSTINTEMLVSGSEDVSAADSKKAMSASKLAELALIDPKRAKRIWANRQSAARSKERKMRYISELERKVQTLQTEATSLSAQLTLLQRDTNGLTAENSELKLRLQTMEQQVHLQDALNEALKEEIQHLKVLTGQAMQNGPVMNYASFGAGQQFYPNNHAMHTLLTTQQFQQLQIHSQKHQHQFQQHQLHQLQQQQQEQQQQQVVGELRSRGSSSSLNQQNDNITGANPPTKDC 422
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 437899 440823 - evm.model.ptg000016l.1108 HCH10g0052 552125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0052 422 Coils Coil 244 313 - -
HCH10g0052 422 MobiDBLite consensus disorder prediction 21 48 - -
HCH10g0052 422 CDD bZIP_plant_RF2 229 278 IPR044759 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0052 422 Gene3D - 227 281 - -
HCH10g0052 422 MobiDBLite consensus disorder prediction 366 422 - -
HCH10g0052 422 SMART brlzneu 224 288 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0052 422 FunFam probable transcription factor PosF21 227 280 - -
HCH10g0052 422 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 70 398 - GO:0003700(PANTHER)|GO:0005634(PANTHER)
HCH10g0052 422 Pfam bZIP transcription factor 228 282 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0052 422 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 289 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0052 422 SUPERFAMILY Leucine zipper domain 228 279 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
HCH10g0052 422 Coils Coil 370 390 - -
HCH10g0052 422 MobiDBLite consensus disorder prediction 1 61 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0052 HCH-Chr10:437899 HCH1g0287 HCH-Chr1:45381096 2.90E-47 dispersed
HCH10g0052 HCH-Chr10:437899 HCH12g1439 HCH-Chr12:38690895 4.30E-43 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32400 PF00170 bZIP_1 9.50E-09 CL0018 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0052 - - - 0.0