Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0056 ATGGACATAACTTTTTTTTCTGCAAAAGAAGCCCCCACAAACTTCTTTCACCCTGCAGCCTGCACCAGCCAACAAAGCTATGATCATCAGGAATCCATAGACATGCAAAGCACCAATCAGCAGCCCCAGAACAGCCACACCTCAACCTGCAGCCACTCATCCGATTACTCGGGCGAACATTCTCCAACGGCGTCGGCGGGGGGTAAATGGTCTTCGACGCTTCTGAAGGAGTGTGCAAGAGCAATTTCAGAAAAGGACTCAACTAAAATCCATCACTTCTTATGGATGTTGAATGAGTTGTCATCCCCTTATGGAGATTGTGATCAGAAATTAGCTTCTTATTTCTTACAAGCTCTATTTTGTAGGGCCACAGAAACTGGTCTAAGATGTTACAAAACCCTAATTTCAGTTGCTGAGAAGAATTACTCTTTTGATTCAGCTAGGAAGCTGATACTCAAGTTTCAAGAAGCAAGTCCATGGACAACTTTTGGTCATGTAGCTTCCAATGGTGCCATTTTAGAAGCCCTTGAAGGAGAGACTAAACTTCACATAATTGACATAAGCAATACTCTTTGCACTCAATGGCCTACTTTGCTTGAGTCTTTGGCAACAAGAAATGATGATACTCCACATTTAAAGCTCACTGTTGTCATAACAACAACTATTGTGAAATCAGTGATGAAGGAAATAGGCCAAAGAATGGAGAAATTTGCTCGACTAATGGGAGTTCCCTTTGAGTTTAATGTTATAAGCGAGATAAATCATTTGGGAGAGCTGACAAAGGAGGTACTAAATGTTGAGGAAGATGAAGCTATCGCAGTGAACTGTATTGGGGCTTTAAGGAGAGTGAAAGTGGAAGAAAGAAACAGTGTGATTGAGATGCTAAAGTCACTGAAGCCAAGAGTTTTGACAGTTGTGGAAGAGGAAGGCGATTTCGTAAGCTCGAGAAACGACTTCGTCAAGTGCTTTGAAGAGTGCCTTAGGTTTTACACACTCTACTTTGAGATGCTTGAAGAGAGTTTTGCCCCAACAAGCAATGAGAGGTTGTCGTTAGAGAGAGAGAGTTCAAGAAGCATAGTAAGGCTATTGGGTTGTGATGAAAATGATGAAAATGGAGAGAGTGAGAGTGAGAGTGAGAGGAGAGAGAGAGGAAAGCAATGGATTGAAAGGCTGAAAGAGGTAACTTTTTCATCAACTGGATTCAGTGATGATGTTATTGATGATGTAAAAGCTCTGCTAAAGAGGTATAAATCTGGATGGGCTCTCTTACAACAAACAGCAGCAGCAGCAGCAGGAAATGAATGTGGAATTTACTTGACTTGGAAGGAAGAACCTGTAGTATGGGTTTCAGCATGGAAACCCTAA 1365 41.83 MDITFFSAKEAPTNFFHPAACTSQQSYDHQESIDMQSTNQQPQNSHTSTCSHSSDYSGEHSPTASAGGKWSSTLLKECARAISEKDSTKIHHFLWMLNELSSPYGDCDQKLASYFLQALFCRATETGLRCYKTLISVAEKNYSFDSARKLILKFQEASPWTTFGHVASNGAILEALEGETKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVITTTIVKSVMKEIGQRMEKFARLMGVPFEFNVISEINHLGELTKEVLNVEEDEAIAVNCIGALRRVKVEERNSVIEMLKSLKPRVLTVVEEEGDFVSSRNDFVKCFEECLRFYTLYFEMLEESFAPTSNERLSLERESSRSIVRLLGCDENDENGESESESERRERGKQWIERLKEVTFSSTGFSDDVIDDVKALLKRYKSGWALLQQTAAAAAGNECGIYLTWKEEPVVWVSAWKP 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 469933 471297 - evm.model.ptg000016l.1104 HCH10g0056 552129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0056 454 ProSiteProfiles GRAS family profile. 62 453 IPR005202 -
HCH10g0056 454 MobiDBLite consensus disorder prediction 27 68 - -
HCH10g0056 454 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 452 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH10g0056 454 Pfam GRAS domain family 73 453 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0056 HCH-Chr10:469933 HCH14g0363 HCH-Chr14:32631160 5.00E-122 dispersed
HCH10g0056 HCH-Chr10:469933 HCH6g0857 HCH-Chr6:43379011 4.40E-38 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32401 PF03514 GRAS 3.90E-93 CL0063 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0056 K27743 - csv:101206730 648.662