Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0061 ATGAGGAGAGAGAGAAGGATTGTTTTGGCAATAATATCATTAATGGGAATTTTGTGTAAGCAAAATGTGGAAGGAGAAAATACATTGCAACCACCAGTGAAGTTGATGTGGCATTATTACAAGCTAAATACAACCTGCCCTGATGCTGAGGAATACATCAAGCATCAAGTTAAATTGTTTTGGCAAAAAGATAAAAGCATCACTCCCAAGTTCCTACGTTTGCTCTCTGCAGATTGCCTTTCCAAAAACGGTTGCGATGGATCAATACTTCTGGATGGCCCAAATTCAGAGAAAAGTGCAGCTCAGAATCAAGGGCTTGGAGGATTTGAAGAAATCGACAAGATCAAAATTGTGCTAGAACAACGATGCCCTAAAGTTGTTTCCTGTGCTGACATTCTTAATTTAGCCACCAGAGATGCCGCCCATTTGGCAGGAGCACCATCTTATCCAGTATATACAGGAAGAAGGGACTGTCTCACAACAAGTATTGAGGCTGTGGACTTTCCATCGCCATCGATATCATGGGAACAAGGCCTTTCATATTTCGAATCTAAAGGTCTTGATGTCTTGGACTTGGCAACATTGCTGGGTGGACACTCAATGGGAAAAACACATTGTAGCTACATCATGGATAGGCTCTACAATTTCAATGCTACAAAAAAACCAGATCCAAGCATCAACAAATCTTTCTTAAATGAGATGAGAAAAAAATGTCCAAAAACAACCTCAAAAGCAGACCCAACAGTGGATCTAACACCAAAATCTGGAAACGATTATCAATTCACTGGTATTTACTATTCTAGAATTCTTTCCAAAAAAGCTGTCCTTGGAATCGATCAACAACTTCTCTTTGGAAATGATACAAATCAAATCGCTGAAGAGTTTGCTCCTAAATCAGGATTTGAAGATTTTCGAAAGTCTTTTGCTCTTTCAATTAGTAGAATGGGAAATATCAAGGTTTTAACTGGAACTGATGGGGAAATACGTCGAAATTGTCGACGAAGGAACTAG 1011 39.17 MRRERRIVLAIISLMGILCKQNVEGENTLQPPVKLMWHYYKLNTTCPDAEEYIKHQVKLFWQKDKSITPKFLRLLSADCLSKNGCDGSILLDGPNSEKSAAQNQGLGGFEEIDKIKIVLEQRCPKVVSCADILNLATRDAAHLAGAPSYPVYTGRRDCLTTSIEAVDFPSPSISWEQGLSYFESKGLDVLDLATLLGGHSMGKTHCSYIMDRLYNFNATKKPDPSINKSFLNEMRKKCPKTTSKADPTVDLTPKSGNDYQFTGIYYSRILSKKAVLGIDQQLLFGNDTNQIAEEFAPKSGFEDFRKSFALSISRMGNIKVLTGTDGEIRRNCRRRN 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 491422 492966 + evm.model.ptg000016l.1099 HCH10g0061 552134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0061 336 PRINTS Haem peroxidase superfamily signature 145 157 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PRINTS Haem peroxidase superfamily signature 191 206 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PRINTS Haem peroxidase superfamily signature 127 144 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PRINTS Haem peroxidase superfamily signature 68 82 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 Gene3D Peroxidase, domain 2 169 315 - -
HCH10g0061 336 ProSiteProfiles Plant heme peroxidase family profile. 34 336 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 FunFam Peroxidase 169 315 - -
HCH10g0061 336 PRINTS Plant peroxidase signature 190 202 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PRINTS Plant peroxidase signature 145 160 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PRINTS Plant peroxidase signature 268 285 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PRINTS Plant peroxidase signature 46 65 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PRINTS Plant peroxidase signature 126 136 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PRINTS Plant peroxidase signature 107 120 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PRINTS Plant peroxidase signature 310 323 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 CDD secretory_peroxidase 34 334 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
HCH10g0061 336 SUPERFAMILY Heme-dependent peroxidases 41 336 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 ProSitePatterns Peroxidases proximal heme-ligand signature. 191 201 IPR019793 -
HCH10g0061 336 Pfam Peroxidase 54 296 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
HCH10g0061 336 PANTHER PEROXIDASE 25-RELATED 38 332 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
HCH10g0061 336 Gene3D - 39 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0061 HCH-Chr10:491422 HCH3g0483 HCH-Chr3:3111123 2.00E-51 dispersed
HCH10g0061 HCH-Chr10:491422 HCH2g0749 HCH-Chr2:51161086 1.70E-47 transposed
HCH10g0061 HCH-Chr10:491422 HCH14g0262 HCH-Chr14:30532058 1.70E-47 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0061 K00430 - csv:101213667 545.043