Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0074 ATGGGAAAGAAAGGGAGTTGGTTTTCTGCTATCAAGAGGGTTTTTACACCCCATTCAAAGGAAAAGCCAGGAAATGATTATGAGAAGAGGAGCAAGAAAGAAAAAAACAAGGGTCATGGAAAATTAAGGCATGGAGAGTCCAATTCTTTCATTCCTCTCTTCAGGGAGCCTAGTAGTGTGGAGAAGATTTTCTTGGATTTTGAGAGAGAACAACAAAGGGTAACATCATTTAGGCCTTCCACACCTCAGGAGCAACAAGCAACACCTCCCTTTGTTACTCCTAGAACTACTTCTCCAAGGGCTTTTTCTCCAAGAACTTCCTCTGCTAGACGAATCTCTCCAACAGTCTCCCCGCCTCGAGCTGCATCTCCTAGAGTTGCTTCTCCACGAGCTTCTTCTCCGAGAACCATAAGCCGTCCCAAGGCATTTCGCTTTCGACTCGAACCAACTCTTCGATACCATCATGCTTCAGCAACTAAGATCCAAGCAGCATATAGAGGTTATGTGGCAAGGAGGAGTTTCAGAGCACTGAAAGGCTTGGTGAGGCTTCAAGGGGTAGTAAGAGGACAGAATGTGAAGCGACAAACGATGAACGCCATGAAGCAGATGCAGCTCTTGGTCCGTGTTCAATCTCAGATACAATCTCGGCGGATTCAGATGTTGGAAAACCAAGCTCGCCATCAGGTTCAATACAAGAATGATAAAGAAGTGGAAAGTGCCTTAGGAAAATGGAGCTTGAGCCAGACATCTGAGGCAGGTAACCAAGAAGATTGGGATGATAGCTTGCTAACAAGAGAGGAAATAGAAGCCAGGTTGCAGAAGAAGGCAGAGGCTATAATCAAGAGGGAGAGAGCAATGGCTTATGCATATTCTCACCAGTTGTGGAAGGCCAGTCCAAATTCTGCACAAGCAGCTCTAGCAGATATCAGGTCTGCAGGATTTCCATGGTGGTGGAACTGGTTAGAGCGGCAACTACCTCCAGCAAATCCTTCTGAACCTCAAACTCTCAAGAATTTCCTTCTTGCACCTCAAACTCCACAGCAAGTGCAGAAGCAAACTCCAAGGTTTCAGCCAAGCAGCAATAAGCAACATCATATAGGGGTGACTGATAACATGGACACTCCCACTCCAAAATCTACAAAATCAACCATCCTCCCAGCCACCAAACCGTCTCGAAACTCGCCTGCATTTCGAACACCGCCTGCATTTAGAACACCGCCTGCAAACAGTTCGAACTTCTCGAGATATTCGAGGCCAAGAGGCATCAATGCAGCAGAATCACCATTTGATGTGCCATTGAAAGATGATGACAGCCTCACCAGCTGCCCTCCCTTTTCAGTTCCACACTACATGTCTCCCACAGTTTCAGCCAAAGCCAAATTAAGAGGCAACGGCAGCAACCCGAATGATCATTTTATCGCTACTCCAAGCAGCGAGTCAAAAAGAAGGGTGACATTCCCTTTTACTCAAGGCCTAGCATCTTTCAAGTGGAACAAAGGGTCCTTGTTTTCCAACAAGGATTCAAGCTCCCAAAGGATGTTAGATAAGAATCAATCTCTTCAATCTCTAGGCAATTTGAGTGTGGATTCTTCAACTTCCTTGCCTGCTGGAGTTGGAAGAAAGCCATTTAACAGATTTGTGTGA 1644 45.86 MGKKGSWFSAIKRVFTPHSKEKPGNDYEKRSKKEKNKGHGKLRHGESNSFIPLFREPSSVEKIFLDFEREQQRVTSFRPSTPQEQQATPPFVTPRTTSPRAFSPRTSSARRISPTVSPPRAASPRVASPRASSPRTISRPKAFRFRLEPTLRYHHASATKIQAAYRGYVARRSFRALKGLVRLQGVVRGQNVKRQTMNAMKQMQLLVRVQSQIQSRRIQMLENQARHQVQYKNDKEVESALGKWSLSQTSEAGNQEDWDDSLLTREEIEARLQKKAEAIIKRERAMAYAYSHQLWKASPNSAQAALADIRSAGFPWWWNWLERQLPPANPSEPQTLKNFLLAPQTPQQVQKQTPRFQPSSNKQHHIGVTDNMDTPTPKSTKSTILPATKPSRNSPAFRTPPAFRTPPANSSNFSRYSRPRGINAAESPFDVPLKDDDSLTSCPPFSVPHYMSPTVSAKAKLRGNGSNPNDHFIATPSSESKRRVTFPFTQGLASFKWNKGSLFSNKDSSSQRMLDKNQSLQSLGNLSVDSSTSLPAGVGRKPFNRFV 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 659441 661755 + evm.model.ptg000016l.1086 HCH10g0074 552147

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0074 547 MobiDBLite consensus disorder prediction 74 114 - -
HCH10g0074 547 MobiDBLite consensus disorder prediction 15 33 - -
HCH10g0074 547 MobiDBLite consensus disorder prediction 354 395 - -
HCH10g0074 547 SMART iq_5 153 175 IPR000048 GO:0005515(InterPro)
HCH10g0074 547 MobiDBLite consensus disorder prediction 1 50 - -
HCH10g0074 547 Pfam Protein of unknown function (DUF4005) 424 511 IPR025064 -
HCH10g0074 547 PANTHER IQ-DOMAIN 5-RELATED 6 482 - -
HCH10g0074 547 Gene3D - 138 174 - -
HCH10g0074 547 ProSiteProfiles IQ motif profile. 154 182 - -
HCH10g0074 547 MobiDBLite consensus disorder prediction 354 419 - -
HCH10g0074 547 Pfam IQ calmodulin-binding motif 155 175 IPR000048 GO:0005515(InterPro)
HCH10g0074 547 MobiDBLite consensus disorder prediction 404 418 - -
HCH10g0074 547 MobiDBLite consensus disorder prediction 73 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0074 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0074 HCH-Chr10:659441 HCH9g0605 HCH-Chr9:4048401 2.60E-32 dispersed
HCH10g0074 HCH-Chr10:659441 HCH5g1196 HCH-Chr5:41234221 4.10E-123 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0657 . 101 278 IQD Protein Family AT3G09710 55.8 2.3e-50 196.8
HCH13g0419 . 1 471 IQD Protein Family AT3G52290 55.7 3.1e-105 379.0
HCH8g0320 . 1 410 IQD Protein Family AT3G22190 55.8 2.5e-91 332.8
HCH12g0495 . 1 440 IQD Protein Family AT2G26180 58.8 4.0e-118 421.8
HCH14g0967 . 1 279 IQD Protein Family AT2G33990 50.5 2.8e-61 232.3
HCH6g0649 . 44 222 IQD Protein Family AT2G33990 53.9 2.1e-48 189.5
HCH6g0649 . 47 257 IQD Protein Family AT3G15050 56.3 1.3e-58 223.4
HCH10g0074 . 1 546 IQD Protein Family AT3G59690 52.3 2.3e-107 386.3
HCH13g1014 . 1 495 IQD Protein Family AT4G00820 54.5 4.5e-122 435.3
HCH7g1783 . 1 512 IQD Protein Family AT4G00820 53.0 1.0e-121 434.1
HCH7g1783 . 1 512 IQD Protein Family AT1G01110 51.8 8.3e-121 431.0
HCH13g1014 . 1 495 IQD Protein Family AT1G01110 52.4 1.4e-120 430.3
HCH4g1441 . 1 385 IQD Protein Family AT3G16490 54.5 1.4e-77 287.0
HCH5g1306 . 1 380 IQD Protein Family AT3G16490 53.2 1.2e-71 267.3
HCH8g0696 . 1 397 IQD Protein Family AT3G16490 52.1 3.2e-69 259.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011147 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31