Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0077 ATGAATTGGTTCATTAATGGTGGAGTTATGGAAACTACGGCTGGTTTGCTTGGTGATGGTGGGAAGATATGGTTCAAATTATGGGAGAAGATCATGGGAAACTGTTGCAAGATCCATCACCAATATTACCAGTATATTGGATCCAAGAAAGTTAGAAAAACATGGTGGAGAAGGCTTTTGGTTGCTTGGATTCTTGGTTGGACAATTGTATCTCTATGGATCTTTCATTACATGAGTTTACAAGCTACTGAGAAGAGGAAAGAGGTCTTAGGAAGTATGTGTGATGAGAGAGCTAGGATGTTACAAGATCAGTTTAATGTCAGTATGAATCATATTCAAGCAATGTCAATTCTGATCTCCACTTTCCATCATGGCAAGAATCCATCTGCTATAGATCAGAGGACCTTTGCTAGGTACACAGAGCGAACTGCTTTCGAAAGGCCTTTAACTAGTGGCGTGGCATATGCGGTAAGGGTGCTCCACTCTGAAAGAGAACATTTTGAGAAGCAACAAGGCTGGACTATTAAAAGGATGGATGAAATCGAGCAAAGTCCGGTTCATGAAGACGACTATGCTCCAGAAGCCCTGGAGCCATCTCCCACACAAGATGAATATGCCCCAGTAATCTTTGCACAGGATACAATTGCTCATGTGGTTTCCCTTGATATGCTGTCTGGAAAGGAAGACCGCACAAATGTATTACGTGCTAGAGCATCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGCTAATCAAAACAAATCGTCTGGGAGTCATATTAACATTTGCCGTCTACAATAGAGATCTACCCTCAAATGCTACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGTGGAGTCTTCGACATCGAGTCACTTGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATTCTAGTTAATGTTTTTGATACCACTAATCAATCACACCCAATCAGCATGTATGGTAAAGATGAATCAGAAGATGGATTTAAGCATGTTAGCACCCTTATCTTTGGGGATCCATTTCGGAAGCATGAGATGAGGTGCAGATTCAAGCAAAGACAACCTTGGCCATGGCTAGCAATTACAACTTCAATTGGTGTACTCATCATTGCCTTGCTTACGGGGTATATATTCCACGCAACCTTGAATCGTATTGCCAAAGTAGAGGATGATTATCATGATATGATGAAACTAAAGAAACGTGCGGAAGATGCTGATGTTGCCAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACTCCAATGAATGGTGTTCTAGGAATGTTGGGTTTACTCATGGACACAGAATTAGACGTGACTCAACAAGATTTTGTTAAAACTGCACAAGATAGTGGAAAAGCTTTGGTATCACTGATAAATGGGGTGTTGGATCAGGCAAAAATTGAATCTGGAAATCTTGAGCTTGAAGCAATCCCATTTAAACCACGAGCAATTTTGGATGATGTCTTGTCACTCTTTTCTGGGAAGTCTCAAGAAAAAGGAGTGGAGCTGGCAGTTTACATCTCTGATCGTGTTCCTGAGATGCTAATTGGTGATCCTGGAAGGTTTAGGCAAATCATTACCAATCTCATGGGAAACTCTATCAAGTTTACGGAGAAAGGACACATATTTGTCACTGTTAATCTTGTTGAGGAGATTATAGAATCAATTGATCTTGAGATCGAGTCTTCATCAAGTAGTACCTTAAGTGGCTATCCTGTTGCCAATAGACCCCTCAGCTGGGCAGGGTTCCGAAATTTCAGTCAAGAGGGACCTGCATGTCATTTCCTGTCATCTTCATCGGACCTTATTAACCTAATAGTATCTGTTGAGGATACAGGTGTCGGTATTCCTCTCGAAGCTCAATCACGTGTTTTCACTCCTTTTATGCAGGTTCAGCCATCTATCTCTAGAACCCATGGGGGAACAGGAATTGGGTTGAGTATTAGCAAATGTTTGGTTGGTCTCATGAAGGGAGAGATTGGGTTTGTGAGTGCACCAAAGATTGGTTCCACCTTCACATTTACAGCTGTTTTCACAAATGGATGTTCCAATTCAAGTGAGTACAAAACCCAACAAATTAAAAAACCATCCATCTCTGTTCCCTCAGAATTTAAGGGTATGAGGGCATTGGTTGTGGACCATCGACCTATTCGAGCCAAGGTATCGAGGTATCATATCCAACGTCTCGGGATACATGTTGAACTATTATCTGACTTGAATCAAGGTCTGTGTAACATGAGTATCGGAGTTGCAACTATCAATATGATTTTTGTTGAACAAGATCTTTGGGATCAGGATACAAGCATATCAGATCTATTTATCAATAATTTGAGAAATTCTCTCGGGGTTCCTCCCAAACTTTTTCTTCTTACTAGCTCCCATAGCTCTTCAAAAGCTAGCTCCATAATTTCTAATACACTCACTCCCACAGTTATGGTAAAGCCGTTGAGAGCAGGTATGCTTGCTGCCTCGCTACACAGAGTCCTCGGAGTGGGGAACAAGGGTAATCCTCGCAATGGAGAGCTTCCTGTTCTGTCTCTCTGTAATCTACTACTCGGCAGGAAAATTCTGGTTGTAGACGACAATAAGGTGAATCGTATAGTTGCTGCTGGTGCTCTAAAAAGGTATGGAGCTGAGGTTGTATGTGAAAACAGTGGAAGAGATGCAATCCGACTTCTCACACCACCCCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGATGGGTTTGAAGCTACAAGAAGCATCCGAGAAATCGAACACCGTATCAATGATGGTATTAGACTCGGAGAATTATCGAAAGAAGCATATGAAAATAAATGTGAATGGCGTGTACCCATCTTGGCCATGACTGCAGATGTAATCCAGGCTACACATGAGGAATGCCGTCGGTGTGGAATGGATGGATATGTCTCGAAGCCATTTGAAGTTGAACGACTCTATAGAGAAGTTTCTCAATTTTTTCCCGGTCCTTCAAATGGGAGTTTATAG 3030 41.85 MNWFINGGVMETTAGLLGDGGKIWFKLWEKIMGNCCKIHHQYYQYIGSKKVRKTWWRRLLVAWILGWTIVSLWIFHYMSLQATEKRKEVLGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDEIEQSPVHEDDYAPEALEPSPTQDEYAPVIFAQDTIAHVVSLDMLSGKEDRTNVLRARASGKGVLTAPFRLIKTNRLGVILTFAVYNRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVFDTTNQSHPISMYGKDESEDGFKHVSTLIFGDPFRKHEMRCRFKQRQPWPWLAITTSIGVLIIALLTGYIFHATLNRIAKVEDDYHDMMKLKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLGLLMDTELDVTQQDFVKTAQDSGKALVSLINGVLDQAKIESGNLELEAIPFKPRAILDDVLSLFSGKSQEKGVELAVYISDRVPEMLIGDPGRFRQIITNLMGNSIKFTEKGHIFVTVNLVEEIIESIDLEIESSSSSTLSGYPVANRPLSWAGFRNFSQEGPACHFLSSSSDLINLIVSVEDTGVGIPLEAQSRVFTPFMQVQPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSAPKIGSTFTFTAVFTNGCSNSSEYKTQQIKKPSISVPSEFKGMRALVVDHRPIRAKVSRYHIQRLGIHVELLSDLNQGLCNMSIGVATINMIFVEQDLWDQDTSISDLFINNLRNSLGVPPKLFLLTSSHSSSKASSIISNTLTPTVMVKPLRAGMLAASLHRVLGVGNKGNPRNGELPVLSLCNLLLGRKILVVDDNKVNRIVAAGALKRYGAEVVCENSGRDAIRLLTPPHHFDACFMDIQMPEMDGFEATRSIREIEHRINDGIRLGELSKEAYENKCEWRVPILAMTADVIQATHEECRRCGMDGYVSKPFEVERLYREVSQFFPGPSNGSL 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 691088 695986 + evm.model.ptg000016l.1083 HCH10g0077 552150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0077 1009 CDD REC_hyHK_CKI1_RcsC-like 865 997 - -
HCH10g0077 1009 Pfam Response regulator receiver domain 865 934 IPR001789 GO:0000160(InterPro)
HCH10g0077 1009 SMART HisKA_10 414 479 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH10g0077 1009 CDD HisKA 414 475 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH10g0077 1009 FunFam Histidine kinase 4 386 477 - -
HCH10g0077 1009 Gene3D - 478 690 IPR036890 -
HCH10g0077 1009 SMART HKATPase_4 526 689 IPR003594 -
HCH10g0077 1009 ProSiteProfiles Histidine kinase domain profile. 421 689 IPR005467 -
HCH10g0077 1009 CDD HATPase_EvgS-ArcB-TorS-like 531 687 - -
HCH10g0077 1009 Coils Coil 391 411 - -
HCH10g0077 1009 CDD PRTases_typeI 818 890 IPR000836 -
HCH10g0077 1009 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 613 685 IPR003594 -
HCH10g0077 1009 SUPERFAMILY CheY-like 712 839 IPR011006 -
HCH10g0077 1009 SMART CHASE_2 127 328 IPR006189 -
HCH10g0077 1009 ProSiteProfiles Response regulatory domain profile. 864 1001 IPR001789 GO:0000160(InterPro)
HCH10g0077 1009 Pfam CHASE domain 130 326 IPR006189 -
HCH10g0077 1009 FunFam Histidine kinase 4 131 360 - -
HCH10g0077 1009 Pfam His Kinase A (phospho-acceptor) domain 414 479 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH10g0077 1009 PRINTS Bacterial sensor protein C-terminal signature 632 642 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH10g0077 1009 PRINTS Bacterial sensor protein C-terminal signature 649 667 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH10g0077 1009 PRINTS Bacterial sensor protein C-terminal signature 614 628 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH10g0077 1009 PRINTS Bacterial sensor protein C-terminal signature 673 686 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
HCH10g0077 1009 Gene3D - 383 477 - -
HCH10g0077 1009 SMART REC_2 863 997 IPR001789 GO:0000160(InterPro)
HCH10g0077 1009 SUPERFAMILY CheY-like 862 1000 IPR011006 -
HCH10g0077 1009 PANTHER TWO-COMPONENT HISTIDINE KINASE 53 1000 IPR050956 -
HCH10g0077 1009 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 401 480 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
HCH10g0077 1009 Gene3D CHASE domain 131 360 IPR042240 -
HCH10g0077 1009 Gene3D - 859 1002 - -
HCH10g0077 1009 Gene3D - 78 130 - -
HCH10g0077 1009 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 468 684 IPR036890 -
HCH10g0077 1009 ProSiteProfiles CHASE domain profile. 127 353 IPR006189 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0077 HCH-Chr10:691088 HCH2g0666 HCH-Chr2:50453017 0.00E+00 dispersed
HCH10g0077 HCH-Chr10:691088 HCH7g0328 HCH-Chr7:2343186 1.3e-313 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32402 PF03924 CHASE 2.00E-37 CL0165 HCH TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0077 K14489 - csv:101216313 1717.98