Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0079 ATGAACGCGGGATATGATATTAATGATCTTTATCAAGAGGCACAAACTCGTTGGCTCAAGCCTCCAGAAGTGCTATTTATTTTACAGAATCATGAGAAATATCAGCTTACGGAGGAGCCCCCTAAAAAGCCAACAAGTGGCTCTTTGTTTCTTTTTAATAAGAGAGTGCTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGCGTAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGTTGAAGCGTTAAATTGCTATTATGCACACGGAGAGCACACCCCCAATTTCCAGAGACATAGTTATTGGATGCTGGATCAGTCATGTGACCACATTGTTCTCGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGACAGAAGGTATTCCACAATCATCTCCAGGATCAGCTTCTACTCTCAGTTCCTATTCATCTCAAAATCTTGCATCCACTTCAGAATATCAACATACTTCATCGAGTCCAGGGTCTGTTGAAGTTAGTTCTAACACTGGAAACCAGACTAATGGGATAGATGGGCACTATGAAAGATCAGAATTAAAAAATTCAAATGGATTTGAGGTTTCTCAAGCTTTGAGAAGGATTGAGGAGCAATTAAGTCTGAATGAAGATAGCTTGAAAGACATTGGTCCATTTTACAGTCAAGAGGAAGTTTCAAATTCTGACCTTCTGGACTGTTATGAGGTGTCTAATGAGGATCAGTTTTCAGTTCTTCAGGGTCCAGATAGTGCAGTATACAGTAATAACTATACATTGTTCGAGATGCAAGATGGTCATGGAAAACACCAGCATGCTATGGGGCACGAGTTTATGTTCGGTGGTGAAGTATCTCAATCATGGGGTGATACACTGGATTCAAGTAAGACATCAGACCTAGAGTCTCAAGAGAGACATTCTCTCCTATGGAATGAAAACGAAAAGCCATCATCATCTCAGAGAAAAGGTACAACTGCAGAACATGACCATCACAATTGGCTGAATTCCAGAGGAAAAAATACTGTAGAAAAATCTTCTCTATTGCTTGAAAGGTACAAAACTCCTGAATATTCTTCGGCAGTAGACACTGATGATGTCAATTCCAACTACTATACACCATTTCTTAAACAAAACCACGGAAATTCTTTTGAAGTTGATACCAGTTTAAGGGTTGCACAAGTGCAGAAATTTACAATCCATCAGATATTACCTGAGTGGAGTTATGTTACTGAGGGTACCAAGGTCGTCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCTTCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGTGTTCTTTGTTGTGAAGCACCTCCGCATCTTCCTGGGAAGGTAACTTTCTGCATTACATCTGGGAATCAGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATCGAGCAAGCACCAGTGTTTGCTATCATTGCCAATCATATTCAGGAGGAGGTATGAAGAGTCCAGAGGAGCTATTATTACTTGTGAGACTTGTGCAAATGCTGTTATCTTACTCAGCAACGCAGAAACACAATGATGTCGATTCTGTAGTTAGGAGCAATCTGAAAGCTGATGATGATCAGTGGAGTTCTATGATAGAGGCTCTTCTAGTTGGTAGTGGGACTTCTTCTGGTACCATTTACTGGCTTTTAGAAGAGCTGCTAAAAGACAAGCTAAATCTCTGGCTTTCTTCCCAAAGTAAAGATAGATGTGATCTGATGGTCTGTTCCTTGTCCAAGAAAGAACAGGGCATTATACACATGATTGCTGGCTTGGGCTTTGTCTGGGCATTAAACCCAATTCTCAGTGGTGGAGTCAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGCTTTGGAAGGGAAAAAATGGTTGCTGCATTAATTGCATCTGGTGCATCAGCTGGCGCTGTGACTGATCCCAGTTCACAAGATCCAGTCGGTAAAACTGCAGCTTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAAGTAGCACTTACTAGTCATCTCTCATCCCTCACACTTGAAGAAAGTGCGCTTTCCAGAGGCTCTGCTGAGGTAGAAGCAGAAATAACAGTAAATAGCATCTCAAAGGGAGGCCTCTCTTCCAGTGAGGACTATATCCCTTTAAAAAATACGTTGGCTGCAGTTAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGTCAGCAGGATGAAGCTGCTATTGTAGCTTGTGTAAATGATTATGGAATTGATTCAAATGACATACAGGGTCTCTTAGCTATGTCAAAGCTAAACTTTTCTAACCGACGTGATTACAATGCAGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGAAAAGAGTTTTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGTTACCAGGTTAGAAAGCATTACAAAATTATTTGTTGGGCTGTTGGAATTCTTGATAAGGTTGTGCTACGTTGGAGAAGGAAAGGACCCGGTTTGAGAGGTTTTCGTGGTGAGAATGAGCCCATTGATGGAAGTGCAGATGATGATGATATTATAAAGGTATTCCGCAAAGAGAAAGTCGAAGGTACTATTGATGAAGCTGTTTCACGAGTGATGTCCATGGTCGACTCTCCAGATGCACGTCAACAATATCACCGTATGCTCGAAGGATTTCGAGAAGCTAAAGCTAAACTTGATGGCACCAGTAGTGGAACTACAGCATCAACTTCTATGGGTGAGGTTTCTAGGATGGAAGATGATGATGATATATATTCCAAGTTTTTATAG 2916 41.36 MNAGYDINDLYQEAQTRWLKPPEVLFILQNHEKYQLTEEPPKKPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEHTPNFQRHSYWMLDQSCDHIVLVHYRDISEGRSGTEGIPQSSPGSASTLSSYSSQNLASTSEYQHTSSSPGSVEVSSNTGNQTNGIDGHYERSELKNSNGFEVSQALRRIEEQLSLNEDSLKDIGPFYSQEEVSNSDLLDCYEVSNEDQFSVLQGPDSAVYSNNYTLFEMQDGHGKHQHAMGHEFMFGGEVSQSWGDTLDSSKTSDLESQERHSLLWNENEKPSSSQRKGTTAEHDHHNWLNSRGKNTVEKSSLLLERYKTPEYSSAVDTDDVNSNYYTPFLKQNHGNSFEVDTSLRVAQVQKFTIHQILPEWSYVTEGTKVVIIGSFLCDPSESSWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVTFCITSGNQESCSEVREFEYRASTSVCYHCQSYSGGGMKSPEELLLLVRLVQMLLSYSATQKHNDVDSVVRSNLKADDDQWSSMIEALLVGSGTSSGTIYWLLEELLKDKLNLWLSSQSKDRCDLMVCSLSKKEQGIIHMIAGLGFVWALNPILSGGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDPVGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTLEESALSRGSAEVEAEITVNSISKGGLSSSEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQDEAAIVACVNDYGIDSNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGPGLRGFRGENEPIDGSADDDDIIKVFRKEKVEGTIDEAVSRVMSMVDSPDARQQYHRMLEGFREAKAKLDGTSSGTTASTSMGEVSRMEDDDDIYSKFL 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 700038 730796 - evm.model.ptg000016l.1081 HCH10g0079 552152

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0079 971 ProSiteProfiles Ankyrin repeat profile. 633 665 IPR002110 GO:0005515(InterPro)
HCH10g0079 971 Pfam IPT/TIG domain 404 483 IPR002909 -
HCH10g0079 971 CDD IPT 404 488 - -
HCH10g0079 971 SMART CG_1_2 10 128 IPR005559 GO:0003677(InterPro)
HCH10g0079 971 ProSiteProfiles Ankyrin repeat region circular profile. 633 659 - -
HCH10g0079 971 Gene3D - 808 855 - -
HCH10g0079 971 MobiDBLite consensus disorder prediction 133 187 - -
HCH10g0079 971 MobiDBLite consensus disorder prediction 303 317 - -
HCH10g0079 971 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677(InterPro)
HCH10g0079 971 MobiDBLite consensus disorder prediction 941 971 - -
HCH10g0079 971 FunFam Calmodulin-binding transcription activator 2 807 855 - -
HCH10g0079 971 Gene3D - 492 698 IPR036770 -
HCH10g0079 971 SMART iq_5 750 772 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 SMART iq_5 807 829 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 SMART iq_5 830 852 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 MobiDBLite consensus disorder prediction 296 343 - -
HCH10g0079 971 MobiDBLite consensus disorder prediction 327 343 - -
HCH10g0079 971 SUPERFAMILY Ankyrin repeat 601 694 IPR036770 -
HCH10g0079 971 Pfam CG-1 domain 13 126 IPR005559 GO:0003677(InterPro)
HCH10g0079 971 MobiDBLite consensus disorder prediction 942 956 - -
HCH10g0079 971 Gene3D Immunoglobulins 398 491 IPR013783 -
HCH10g0079 971 MobiDBLite consensus disorder prediction 957 971 - -
HCH10g0079 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 859 IPR027417 -
HCH10g0079 971 ProSiteProfiles IQ motif profile. 808 837 - -
HCH10g0079 971 ProSiteProfiles IQ motif profile. 831 855 - -
HCH10g0079 971 SMART ANK_2a 633 662 IPR002110 GO:0005515(InterPro)
HCH10g0079 971 ProSiteProfiles IQ motif profile. 751 779 - -
HCH10g0079 971 Pfam IQ calmodulin-binding motif 810 828 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 MobiDBLite consensus disorder prediction 130 196 - -
HCH10g0079 971 Pfam Ankyrin repeats (3 copies) 607 692 IPR002110 GO:0005515(InterPro)
HCH10g0079 971 SUPERFAMILY E set domains 404 488 IPR014756 -
HCH10g0079 971 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 938 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0079 K21596 - - csv:101222798 1430.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0079 HCH-Chr10:700038 HCH13g1233 HCH-Chr13:39901756 1.70E-132 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH4g1867 . 1 1092 CAMTA Transcription Factor Family AT5G64220 54.8 4.6e-288 987.6
HCH10g0079 . 5 967 CAMTA Transcription Factor Family AT1G67310 51.5 2.5e-259 892.1
HCH6g1739 . 35 915 CAMTA Transcription Factor Family AT3G16940 55.2 1.8e-268 922.2
HCH6g1739 . 12 633 CAMTA Transcription Factor Family AT4G16150 54.9 1.3e-198 690.3
HCH4g1867 . 1 1092 CAMTA Transcription Factor Family AT5G64220 54.8 4.6e-288 987.6
HCH10g0079 . 5 967 CAMTA Transcription Factor Family AT1G67310 51.5 2.5e-259 892.1
HCH6g1739 . 12 633 CAMTA Transcription Factor Family AT4G16150 54.9 1.3e-198 690.3
HCH6g1739 . 35 915 CAMTA Transcription Factor Family AT3G16940 55.2 1.8e-268 922.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32403 PF03859 CG-1 3.40E-47 No_clan HCH TF