Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0079 ATGAACGCGGGATATGATATTAATGATCTTTATCAAGAGGCACAAACTCGTTGGCTCAAGCCTCCAGAAGTGCTATTTATTTTACAGAATCATGAGAAATATCAGCTTACGGAGGAGCCCCCTAAAAAGCCAACAAGTGGCTCTTTGTTTCTTTTTAATAAGAGAGTGCTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGCGTAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGTTGAAGCGTTAAATTGCTATTATGCACACGGAGAGCACACCCCCAATTTCCAGAGACATAGTTATTGGATGCTGGATCAGTCATGTGACCACATTGTTCTCGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGACAGAAGGTATTCCACAATCATCTCCAGGATCAGCTTCTACTCTCAGTTCCTATTCATCTCAAAATCTTGCATCCACTTCAGAATATCAACATACTTCATCGAGTCCAGGGTCTGTTGAAGTTAGTTCTAACACTGGAAACCAGACTAATGGGATAGATGGGCACTATGAAAGATCAGAATTAAAAAATTCAAATGGATTTGAGGTTTCTCAAGCTTTGAGAAGGATTGAGGAGCAATTAAGTCTGAATGAAGATAGCTTGAAAGACATTGGTCCATTTTACAGTCAAGAGGAAGTTTCAAATTCTGACCTTCTGGACTGTTATGAGGTGTCTAATGAGGATCAGTTTTCAGTTCTTCAGGGTCCAGATAGTGCAGTATACAGTAATAACTATACATTGTTCGAGATGCAAGATGGTCATGGAAAACACCAGCATGCTATGGGGCACGAGTTTATGTTCGGTGGTGAAGTATCTCAATCATGGGGTGATACACTGGATTCAAGTAAGACATCAGACCTAGAGTCTCAAGAGAGACATTCTCTCCTATGGAATGAAAACGAAAAGCCATCATCATCTCAGAGAAAAGGTACAACTGCAGAACATGACCATCACAATTGGCTGAATTCCAGAGGAAAAAATACTGTAGAAAAATCTTCTCTATTGCTTGAAAGGTACAAAACTCCTGAATATTCTTCGGCAGTAGACACTGATGATGTCAATTCCAACTACTATACACCATTTCTTAAACAAAACCACGGAAATTCTTTTGAAGTTGATACCAGTTTAAGGGTTGCACAAGTGCAGAAATTTACAATCCATCAGATATTACCTGAGTGGAGTTATGTTACTGAGGGTACCAAGGTCGTCATTATTGGATCTTTTCTTTGTGATCCTTCAGAATCTTCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGTGTTCTTTGTTGTGAAGCACCTCCGCATCTTCCTGGGAAGGTAACTTTCTGCATTACATCTGGGAATCAGGAGTCCTGCAGTGAAGTCAGAGAGTTTGAATATCGAGCAAGCACCAGTGTTTGCTATCATTGCCAATCATATTCAGGAGGAGGTATGAAGAGTCCAGAGGAGCTATTATTACTTGTGAGACTTGTGCAAATGCTGTTATCTTACTCAGCAACGCAGAAACACAATGATGTCGATTCTGTAGTTAGGAGCAATCTGAAAGCTGATGATGATCAGTGGAGTTCTATGATAGAGGCTCTTCTAGTTGGTAGTGGGACTTCTTCTGGTACCATTTACTGGCTTTTAGAAGAGCTGCTAAAAGACAAGCTAAATCTCTGGCTTTCTTCCCAAAGTAAAGATAGATGTGATCTGATGGTCTGTTCCTTGTCCAAGAAAGAACAGGGCATTATACACATGATTGCTGGCTTGGGCTTTGTCTGGGCATTAAACCCAATTCTCAGTGGTGGAGTCAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGCTTTGGAAGGGAAAAAATGGTTGCTGCATTAATTGCATCTGGTGCATCAGCTGGCGCTGTGACTGATCCCAGTTCACAAGATCCAGTCGGTAAAACTGCAGCTTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAAGTAGCACTTACTAGTCATCTCTCATCCCTCACACTTGAAGAAAGTGCGCTTTCCAGAGGCTCTGCTGAGGTAGAAGCAGAAATAACAGTAAATAGCATCTCAAAGGGAGGCCTCTCTTCCAGTGAGGACTATATCCCTTTAAAAAATACGTTGGCTGCAGTTAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGTCAGCAGGATGAAGCTGCTATTGTAGCTTGTGTAAATGATTATGGAATTGATTCAAATGACATACAGGGTCTCTTAGCTATGTCAAAGCTAAACTTTTCTAACCGACGTGATTACAATGCAGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGAAAAGAGTTTTTATCAATTCGTCAGAAAGTTGTGAAGATACAGGCACATGTGAGGGGTTACCAGGTTAGAAAGCATTACAAAATTATTTGTTGGGCTGTTGGAATTCTTGATAAGGTTGTGCTACGTTGGAGAAGGAAAGGACCCGGTTTGAGAGGTTTTCGTGGTGAGAATGAGCCCATTGATGGAAGTGCAGATGATGATGATATTATAAAGGTATTCCGCAAAGAGAAAGTCGAAGGTACTATTGATGAAGCTGTTTCACGAGTGATGTCCATGGTCGACTCTCCAGATGCACGTCAACAATATCACCGTATGCTCGAAGGATTTCGAGAAGCTAAAGCTAAACTTGATGGCACCAGTAGTGGAACTACAGCATCAACTTCTATGGGTGAGGTTTCTAGGATGGAAGATGATGATGATATATATTCCAAGTTTTTATAG 2916 41.36 MNAGYDINDLYQEAQTRWLKPPEVLFILQNHEKYQLTEEPPKKPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNVEALNCYYAHGEHTPNFQRHSYWMLDQSCDHIVLVHYRDISEGRSGTEGIPQSSPGSASTLSSYSSQNLASTSEYQHTSSSPGSVEVSSNTGNQTNGIDGHYERSELKNSNGFEVSQALRRIEEQLSLNEDSLKDIGPFYSQEEVSNSDLLDCYEVSNEDQFSVLQGPDSAVYSNNYTLFEMQDGHGKHQHAMGHEFMFGGEVSQSWGDTLDSSKTSDLESQERHSLLWNENEKPSSSQRKGTTAEHDHHNWLNSRGKNTVEKSSLLLERYKTPEYSSAVDTDDVNSNYYTPFLKQNHGNSFEVDTSLRVAQVQKFTIHQILPEWSYVTEGTKVVIIGSFLCDPSESSWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVTFCITSGNQESCSEVREFEYRASTSVCYHCQSYSGGGMKSPEELLLLVRLVQMLLSYSATQKHNDVDSVVRSNLKADDDQWSSMIEALLVGSGTSSGTIYWLLEELLKDKLNLWLSSQSKDRCDLMVCSLSKKEQGIIHMIAGLGFVWALNPILSGGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQDPVGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTLEESALSRGSAEVEAEITVNSISKGGLSSSEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQDEAAIVACVNDYGIDSNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSIRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGPGLRGFRGENEPIDGSADDDDIIKVFRKEKVEGTIDEAVSRVMSMVDSPDARQQYHRMLEGFREAKAKLDGTSSGTTASTSMGEVSRMEDDDDIYSKFL 971
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 700038 730796 - evm.model.ptg000016l.1081 HCH10g0079 552152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0079 971 ProSiteProfiles Ankyrin repeat profile. 633 665 IPR002110 GO:0005515(InterPro)
HCH10g0079 971 Pfam IPT/TIG domain 404 483 IPR002909 -
HCH10g0079 971 CDD IPT 404 488 - -
HCH10g0079 971 SMART CG_1_2 10 128 IPR005559 GO:0003677(InterPro)
HCH10g0079 971 ProSiteProfiles Ankyrin repeat region circular profile. 633 659 - -
HCH10g0079 971 Gene3D - 808 855 - -
HCH10g0079 971 MobiDBLite consensus disorder prediction 133 187 - -
HCH10g0079 971 MobiDBLite consensus disorder prediction 303 317 - -
HCH10g0079 971 ProSiteProfiles CG-1 DNA-binding domain profile. 7 133 IPR005559 GO:0003677(InterPro)
HCH10g0079 971 MobiDBLite consensus disorder prediction 941 971 - -
HCH10g0079 971 FunFam Calmodulin-binding transcription activator 2 807 855 - -
HCH10g0079 971 Gene3D - 492 698 IPR036770 -
HCH10g0079 971 SMART iq_5 750 772 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 SMART iq_5 807 829 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 SMART iq_5 830 852 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 MobiDBLite consensus disorder prediction 296 343 - -
HCH10g0079 971 MobiDBLite consensus disorder prediction 327 343 - -
HCH10g0079 971 SUPERFAMILY Ankyrin repeat 601 694 IPR036770 -
HCH10g0079 971 Pfam CG-1 domain 13 126 IPR005559 GO:0003677(InterPro)
HCH10g0079 971 MobiDBLite consensus disorder prediction 942 956 - -
HCH10g0079 971 Gene3D Immunoglobulins 398 491 IPR013783 -
HCH10g0079 971 MobiDBLite consensus disorder prediction 957 971 - -
HCH10g0079 971 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 773 859 IPR027417 -
HCH10g0079 971 ProSiteProfiles IQ motif profile. 808 837 - -
HCH10g0079 971 ProSiteProfiles IQ motif profile. 831 855 - -
HCH10g0079 971 SMART ANK_2a 633 662 IPR002110 GO:0005515(InterPro)
HCH10g0079 971 ProSiteProfiles IQ motif profile. 751 779 - -
HCH10g0079 971 Pfam IQ calmodulin-binding motif 810 828 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 Pfam IQ calmodulin-binding motif 833 852 IPR000048 GO:0005515(InterPro)
HCH10g0079 971 MobiDBLite consensus disorder prediction 130 196 - -
HCH10g0079 971 Pfam Ankyrin repeats (3 copies) 607 692 IPR002110 GO:0005515(InterPro)
HCH10g0079 971 SUPERFAMILY E set domains 404 488 IPR014756 -
HCH10g0079 971 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 5 938 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0079 HCH-Chr10:700038 HCH13g1233 HCH-Chr13:39901756 1.70E-132 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32403 PF03859 CG-1 3.40E-47 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0079 K21596 - csv:101222798 1430.23