Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0083 ATGGGAAGAGGGAGAGTGGAGCTGAAGAGAATAGAGAACAAGATCAACAGACAAGTTACGTTTGCAAAGAGAAGAAATGGACTTTTGAAGAAAGCTTATGAACTTTCCGTTCTCTGTGATGCTGAAGTTGCTCTCATCATCTTCTCCAATAGAGGAAAACTCTACGAGTTTTGCAGCAGTTCAAGCATGCTCAAAACTCTAGAGAGATACCAGAAGTGCAACTATGGAGCACCAGAGCCAAATGTCTCCACAAGAGAGGCCTTGGAATTGAGCAGTCAGCAGGAGTATTTGAAGCTTAAAGCTCGCTATGAAGCTCTACAACGATCCCAAAGGAATCTCTTGGGAGAAGATCTTGGCCCATTGAGTAGCAAAGAACTTGAGTCACTTGAAAGACAGCTTGATATGTCACTCAAGCAAATCAGATCAACAAGGACTCAGTACATGTTAGATCAGCTCACTGATCTTCAACGTAAGGAACATCTTCTTAACGAAGCCAACAAGACTCTGAAACAAAGGTTAGTAGAAGGATATCAAGTAAATGCTCTCCAATTGAATCAAAGTGCTGATGACATGATGTATGGAAGACAGCAAGCTCATTCTCATGGCGATGGATTCTTCCATCCCTTAGATTGTGAGCCAACCTTACATATTGGGTATCAGCAAGATCCTATAACAGTGGTCAATGCTGGACCAAGCATGAACAATTTCCTGCCAGGATGGTTGCCCTAA 729 42.52 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAHSHGDGFFHPLDCEPTLHIGYQQDPITVVNAGPSMNNFLPGWLP 242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 771994 776918 - evm.model.ptg000016l.1077 HCH10g0083 552156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0083 242 Coils Coil 152 172 - -
HCH10g0083 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 191 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
HCH10g0083 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH10g0083 242 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH10g0083 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH10g0083 242 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH10g0083 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH10g0083 242 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
HCH10g0083 242 Coils Coil 126 146 - -
HCH10g0083 242 FunFam MADS-box transcription factor 7 13 98 - -
HCH10g0083 242 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH10g0083 242 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
HCH10g0083 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH10g0083 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH10g0083 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
HCH10g0083 242 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0083 HCH-Chr10:771994 HCH9g0326 HCH-Chr9:2032118 8.60E-81 dispersed
HCH10g0082 HCH-Chr10:741530 HCH10g0083 HCH-Chr10:771994 2.80E-21 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32405 PF01486 K-box 2.90E-26 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0083 - - - 0.0