Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0084 ATGAAAAGAGTGCTATCCGTTTCTGTCAATTCAATGGAGCTTGATTTTTTGAAATTCTCACGAGACTTGGACCAGAAGTTGCTTGAAACTTGGGCACTGGTAGTATCTGTGGATGCGATGAAAGGAACTAACGTTACTGTGATGGAGTCATTGTCGTCGAGATTAATGAAGAGGTCCCGTACACCTGGAAATGGATCCCAAGTCCCTTCATGTTTGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAAGGACTACCATCGCCGCCATAAAGTATGTGAGCTTCACTCTAAAACACCCAAAGTAACAATTTGTGGTCAGGAAAAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTTGAGTTTGATGATCGAAAGAGAAGCTGTAGGAAACGTCTTGATGGGCATAATCGTCGTCGAAGAAAGCCTCAGCCAGCATCTATGTCATTGAATGCAGGAAGATTTCTCTACGGTAACCAAGGTCCTAGATTCTTACCATTTGGTAGTCAACTACTACCAACCAGTGATGATATAAGCTCTTCTTGGATGGGAACTGTCAAGCCTGAGAATAATGCCCTTCTTTGTGGCAGTAACTCACTGTATGACTTTTCTGAGAGAAGAAAAAGTATGTTGCCTGGATCCTTGGTTTCTGATTATGAAGAAAAACAATCAGCAATCTCGTGCGTTCCGTTAGGAGTGTTTCCCAAATCTTCTGCTGGCCAGCCATTTCTTGATAACAGCTTTGGATCCAGCGATGACGGGAATGTTCAAAAAGTGCTCGCCAACGGATTAAATCGATTTTTCGATTCGAATCGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGACCGAGGAGATTAATATAAGCTCCATGGTCCAACCAAACCTTATACCCCAAGCTAACTATATCCACAATGTTGAAAGCAATGGTTTTGGGTTGGGGAGTGACCCTGTTAATTCTGCTTTGGTTTCTGATGGTAGCAGTGATGCCAACATCCAATGCTACTCCACATTTCATATGGGAGCTGATGGATCAACAGCAACTGGGCCTCACCACACACTCTTCTTTTCATGGGATTGA 1086 43.55 MKRVLSVSVNSMELDFLKFSRDLDQKLLETWALVVSVDAMKGTNVTVMESLSSRLMKRSRTPGNGSQVPSCLVDGCSSDLSKCKDYHRRHKVCELHSKTPKVTICGQEKRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPASMSLNAGRFLYGNQGPRFLPFGSQLLPTSDDISSSWMGTVKPENNALLCGSNSLYDFSERRKSMLPGSLVSDYEEKQSAISCVPLGVFPKSSAGQPFLDNSFGSSDDGNVQKVLANGLNRFFDSNRALSLLSTPVETEEINISSMVQPNLIPQANYIHNVESNGFGLGSDPVNSALVSDGSSDANIQCYSTFHMGADGSTATGPHHTLFFSWD 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 789274 791927 - evm.model.ptg000016l.1076 HCH10g0084 552157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0084 361 Pfam SBP domain 71 144 IPR004333 GO:0003677(InterPro)
HCH10g0084 361 FunFam Squamosa promoter-binding-like protein 14 62 132 - -
HCH10g0084 361 SUPERFAMILY SBT domain 69 150 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH10g0084 361 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 181 IPR044817 GO:0003677(InterPro)
HCH10g0084 361 MobiDBLite consensus disorder prediction 135 154 - -
HCH10g0084 361 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677(InterPro)
HCH10g0084 361 Gene3D - 62 132 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0084 HCH-Chr10:789274 HCH8g1492 HCH-Chr8:49214716 9.60E-52 dispersed
HCH10g0084 HCH-Chr10:789274 HCH5g1191 HCH-Chr5:41002960 3.60E-83 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32406 PF03110 SBP 1.10E-28 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0084 - - - 0.0