Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0084 ATGAAAAGAGTGCTATCCGTTTCTGTCAATTCAATGGAGCTTGATTTTTTGAAATTCTCACGAGACTTGGACCAGAAGTTGCTTGAAACTTGGGCACTGGTAGTATCTGTGGATGCGATGAAAGGAACTAACGTTACTGTGATGGAGTCATTGTCGTCGAGATTAATGAAGAGGTCCCGTACACCTGGAAATGGATCCCAAGTCCCTTCATGTTTGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAAGGACTACCATCGCCGCCATAAAGTATGTGAGCTTCACTCTAAAACACCCAAAGTAACAATTTGTGGTCAGGAAAAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTTGAGTTTGATGATCGAAAGAGAAGCTGTAGGAAACGTCTTGATGGGCATAATCGTCGTCGAAGAAAGCCTCAGCCAGCATCTATGTCATTGAATGCAGGAAGATTTCTCTACGGTAACCAAGGTCCTAGATTCTTACCATTTGGTAGTCAACTACTACCAACCAGTGATGATATAAGCTCTTCTTGGATGGGAACTGTCAAGCCTGAGAATAATGCCCTTCTTTGTGGCAGTAACTCACTGTATGACTTTTCTGAGAGAAGAAAAAGTATGTTGCCTGGATCCTTGGTTTCTGATTATGAAGAAAAACAATCAGCAATCTCGTGCGTTCCGTTAGGAGTGTTTCCCAAATCTTCTGCTGGCCAGCCATTTCTTGATAACAGCTTTGGATCCAGCGATGACGGGAATGTTCAAAAAGTGCTCGCCAACGGATTAAATCGATTTTTCGATTCGAATCGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGACCGAGGAGATTAATATAAGCTCCATGGTCCAACCAAACCTTATACCCCAAGCTAACTATATCCACAATGTTGAAAGCAATGGTTTTGGGTTGGGGAGTGACCCTGTTAATTCTGCTTTGGTTTCTGATGGTAGCAGTGATGCCAACATCCAATGCTACTCCACATTTCATATGGGAGCTGATGGATCAACAGCAACTGGGCCTCACCACACACTCTTCTTTTCATGGGATTGA 1086 43.55 MKRVLSVSVNSMELDFLKFSRDLDQKLLETWALVVSVDAMKGTNVTVMESLSSRLMKRSRTPGNGSQVPSCLVDGCSSDLSKCKDYHRRHKVCELHSKTPKVTICGQEKRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPASMSLNAGRFLYGNQGPRFLPFGSQLLPTSDDISSSWMGTVKPENNALLCGSNSLYDFSERRKSMLPGSLVSDYEEKQSAISCVPLGVFPKSSAGQPFLDNSFGSSDDGNVQKVLANGLNRFFDSNRALSLLSTPVETEEINISSMVQPNLIPQANYIHNVESNGFGLGSDPVNSALVSDGSSDANIQCYSTFHMGADGSTATGPHHTLFFSWD 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 789274 791927 - evm.model.ptg000016l.1076 HCH10g0084 552157

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0084 361 Pfam SBP domain 71 144 IPR004333 GO:0003677(InterPro)
HCH10g0084 361 FunFam Squamosa promoter-binding-like protein 14 62 132 - -
HCH10g0084 361 SUPERFAMILY SBT domain 69 150 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
HCH10g0084 361 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 51 181 IPR044817 GO:0003677(InterPro)
HCH10g0084 361 MobiDBLite consensus disorder prediction 135 154 - -
HCH10g0084 361 ProSiteProfiles Zinc finger SBP-type profile. 68 145 IPR004333 GO:0003677(InterPro)
HCH10g0084 361 Gene3D - 62 132 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0084 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0084 HCH-Chr10:789274 HCH8g1492 HCH-Chr8:49214716 9.60E-52 dispersed
HCH10g0084 HCH-Chr10:789274 HCH5g1191 HCH-Chr5:41002960 3.60E-83 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH6g0405 . 179 1018 SBP-box Gene Family AT2G47070 52.0 2.9e-228 788.5
HCH6g0405 . 24 1018 SBP-box Gene Family AT3G60030 51.4 5.2e-259 891.0
HCH10g0084 . 34 184 SBP-box Gene Family AT5G50570 55.2 3.4e-41 166.0
HCH9g0053 . 55 169 SBP-box Gene Family AT5G50570 66.1 1.2e-38 157.5
HCH6g0405 . 179 1018 SBP-box Gene Family AT2G47070 52.0 2.9e-228 788.5
HCH6g0405 . 24 1018 SBP-box Gene Family AT3G60030 51.4 5.2e-259 891.0
HCH10g0084 . 34 184 SBP-box Gene Family AT5G50570 55.2 3.4e-41 166.0
HCH9g0053 . 55 169 SBP-box Gene Family AT5G50570 66.1 1.2e-38 157.5
HCH10g0084 . 34 184 SBP-box Gene Family AT5G50670 55.2 3.4e-41 166.0
HCH9g0053 . 55 169 SBP-box Gene Family AT5G50670 66.1 1.2e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32406 PF03110 SBP 1.10E-28 No_clan HCH TF