Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0089 | ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAAGAAGAAAAATTAAATCCTGAAAAAGAAAGTGATGATGGAAAGCAACAACCCCACCAATTAGTTGTTCCTTCTAACATTTCAAAATTGCCTTCTGGAATAGACAAACTTAGGGCAAGAAATAATGGAGGTTCTAAAAGGGAACAACCGAGTCCCAAGGATGGGCCTCTTGTCAATATTTCTGCTCAAACATTCACTTTCCGTGAGCTCGCAGCTGCAACAAAGAATTTCAGGCCTGAGTGCTTCATAGGGGAAGGGGGATTTGGACGTGTATACCAAGGGCGCCTTGAAAGCACAGGCCAGATTGTTGCTGTAAAACAGTTGGATAGGAATGGTCTTCAGGGTAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTTTACATCATCAGAATCTGGTGAATCTGATTGGTTACTGTGCTGATGGAGATCAACGGCTTCTTGTGTATGAGTTCATGCCATTGGGATCATTGGAAGATCATCTTCATGATGTTCCACCTGATAAGGAACCCCTAGATTGGAACATAAGAATGAAAATAGCTGCAGGTGCAGCCAGAGGTTTGGAGTACTTGCATGATAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCTTCAAATATATTACTAGATGAAGGATATCATCCTAAGCTTTCTGATTTTGGGCTTGCAAAGCTGGGTCCTGTTGGAGATAAATCACATGTTTCCACCAGGGTCATGGGAACTTACGGCTACTGTGCTCCAGAATATGCCATGACTGGACAATTAACCGTGAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTAATTACTGGACGGCGGGCCATTGATAGCACCCGTCCCCAAGGCGAACAGAACCTTGTGACATGGGCACGTCCATTTTTCAACGACCGCAGAAGATTCTCAAAATTGGCTGATCCCCAATTGCAGGGGCGGTATCCCATGCGAGGCTTGTACCAGGCTTTAGCCGTGGCGTCCATGTGTACCCAAGAACAGGCTGCCGCACGTCCTCTCATTGGAGATGTAGTCACCGCCCTTTCTTATTTGGCAAACCAAGCCTATGATCCAAGTTCTCCTTCAGGTACTGCCTACAGAGGTTCTGGTGATCGGGATGAAAAACGAAACAGAGACGAGAAAGGTGGTGGGATATCAAAGAATGAAGAAGGGGGAGGAGTATCAGGACGAAGATGGACCTTGGATGGTTCAGAGAAGGACGATTCCCCAAGGGAGACTGGTAGGATTTTGAATAGGGATTTAGATAGAGAACGTGCGGTCGCTGAGGCCAGGACGTGGGCGAGACGGCAGAGTGCACAAGGAAGCTTTGACGGCTCCAATGCGTAA | 1386 | 45.89 | MGCFPCFDSREEEKLNPEKESDDGKQQPHQLVVPSNISKLPSGIDKLRARNNGGSKREQPSPKDGPLVNISAQTFTFRELAAATKNFRPECFIGEGGFGRVYQGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDVPPDKEPLDWNIRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQAYDPSSPSGTAYRGSGDRDEKRNRDEKGGGISKNEEGGGVSGRRWTLDGSEKDDSPRETGRILNRDLDRERAVAEARTWARRQSAQGSFDGSNA | 461 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 834036 | 837640 | - | evm.model.ptg000016l.1071 | HCH10g0089 | 552162 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0089 | 461 | Gene3D | Transferase(Phosphotransferase) domain 1 | 164 | 375 | - | - | |
HCH10g0089 | 461 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
HCH10g0089 | 461 | Gene3D | Phosphorylase Kinase; domain 1 | 60 | 163 | - | - | |
HCH10g0089 | 461 | SUPERFAMILY | Protein kinase-like (PK-like) | 65 | 361 | IPR011009 | - | |
HCH10g0089 | 461 | FunFam | Serine/threonine-protein kinase PBS1 | 164 | 378 | - | - | |
HCH10g0089 | 461 | MobiDBLite | consensus disorder prediction | 7 | 26 | - | - | |
HCH10g0089 | 461 | PANTHER | OS07G0668900 PROTEIN | 32 | 382 | - | - | |
HCH10g0089 | 461 | CDD | STKc_IRAK | 93 | 361 | - | - | |
HCH10g0089 | 461 | MobiDBLite | consensus disorder prediction | 381 | 399 | - | - | |
HCH10g0089 | 461 | MobiDBLite | consensus disorder prediction | 413 | 436 | - | - | |
HCH10g0089 | 461 | ProSiteProfiles | Protein kinase domain profile. | 87 | 364 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g0089 | 461 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 210 | 222 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH10g0089 | 461 | ProSitePatterns | Protein kinases ATP-binding region signature. | 93 | 116 | IPR017441 | GO:0005524(InterPro) | |
HCH10g0089 | 461 | FunFam | Serine/threonine-protein kinase PBS1 | 61 | 163 | - | - | |
HCH10g0089 | 461 | Pfam | Protein kinase domain | 92 | 296 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g0089 | 461 | MobiDBLite | consensus disorder prediction | 371 | 436 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0089 | HCH-Chr10:834036 | HCH6g1669 | HCH-Chr6:49554733 | 1.30E-170 | dispersed | |
HCH10g0089 | HCH-Chr10:834036 | HCH7g1120 | HCH-Chr7:43960087 | 4.00E-180 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80972 | PF00069 | Pkinase | 1.80E-44 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0089 | K13430 | - | csv:101219880 | 827.009 |