Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0089 ATGGGTTGTTTTCCTTGTTTCGATTCGAGGGAAGAAGAAAAATTAAATCCTGAAAAAGAAAGTGATGATGGAAAGCAACAACCCCACCAATTAGTTGTTCCTTCTAACATTTCAAAATTGCCTTCTGGAATAGACAAACTTAGGGCAAGAAATAATGGAGGTTCTAAAAGGGAACAACCGAGTCCCAAGGATGGGCCTCTTGTCAATATTTCTGCTCAAACATTCACTTTCCGTGAGCTCGCAGCTGCAACAAAGAATTTCAGGCCTGAGTGCTTCATAGGGGAAGGGGGATTTGGACGTGTATACCAAGGGCGCCTTGAAAGCACAGGCCAGATTGTTGCTGTAAAACAGTTGGATAGGAATGGTCTTCAGGGTAACAGAGAATTTCTAGTGGAGGTTCTCATGCTTAGCCTTTTACATCATCAGAATCTGGTGAATCTGATTGGTTACTGTGCTGATGGAGATCAACGGCTTCTTGTGTATGAGTTCATGCCATTGGGATCATTGGAAGATCATCTTCATGATGTTCCACCTGATAAGGAACCCCTAGATTGGAACATAAGAATGAAAATAGCTGCAGGTGCAGCCAGAGGTTTGGAGTACTTGCATGATAAGGCAAACCCTCCAGTTATTTATAGAGACTTCAAATCTTCAAATATATTACTAGATGAAGGATATCATCCTAAGCTTTCTGATTTTGGGCTTGCAAAGCTGGGTCCTGTTGGAGATAAATCACATGTTTCCACCAGGGTCATGGGAACTTACGGCTACTGTGCTCCAGAATATGCCATGACTGGACAATTAACCGTGAAGTCTGATGTTTATAGTTTTGGTGTTGTCTTCTTAGAGTTAATTACTGGACGGCGGGCCATTGATAGCACCCGTCCCCAAGGCGAACAGAACCTTGTGACATGGGCACGTCCATTTTTCAACGACCGCAGAAGATTCTCAAAATTGGCTGATCCCCAATTGCAGGGGCGGTATCCCATGCGAGGCTTGTACCAGGCTTTAGCCGTGGCGTCCATGTGTACCCAAGAACAGGCTGCCGCACGTCCTCTCATTGGAGATGTAGTCACCGCCCTTTCTTATTTGGCAAACCAAGCCTATGATCCAAGTTCTCCTTCAGGTACTGCCTACAGAGGTTCTGGTGATCGGGATGAAAAACGAAACAGAGACGAGAAAGGTGGTGGGATATCAAAGAATGAAGAAGGGGGAGGAGTATCAGGACGAAGATGGACCTTGGATGGTTCAGAGAAGGACGATTCCCCAAGGGAGACTGGTAGGATTTTGAATAGGGATTTAGATAGAGAACGTGCGGTCGCTGAGGCCAGGACGTGGGCGAGACGGCAGAGTGCACAAGGAAGCTTTGACGGCTCCAATGCGTAA 1386 45.89 MGCFPCFDSREEEKLNPEKESDDGKQQPHQLVVPSNISKLPSGIDKLRARNNGGSKREQPSPKDGPLVNISAQTFTFRELAAATKNFRPECFIGEGGFGRVYQGRLESTGQIVAVKQLDRNGLQGNREFLVEVLMLSLLHHQNLVNLIGYCADGDQRLLVYEFMPLGSLEDHLHDVPPDKEPLDWNIRMKIAAGAARGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRRAIDSTRPQGEQNLVTWARPFFNDRRRFSKLADPQLQGRYPMRGLYQALAVASMCTQEQAAARPLIGDVVTALSYLANQAYDPSSPSGTAYRGSGDRDEKRNRDEKGGGISKNEEGGGVSGRRWTLDGSEKDDSPRETGRILNRDLDRERAVAEARTWARRQSAQGSFDGSNA 461
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 834036 837640 - evm.model.ptg000016l.1071 HCH10g0089 552162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0089 461 Gene3D Transferase(Phosphotransferase) domain 1 164 375 - -
HCH10g0089 461 MobiDBLite consensus disorder prediction 1 67 - -
HCH10g0089 461 Gene3D Phosphorylase Kinase; domain 1 60 163 - -
HCH10g0089 461 SUPERFAMILY Protein kinase-like (PK-like) 65 361 IPR011009 -
HCH10g0089 461 FunFam Serine/threonine-protein kinase PBS1 164 378 - -
HCH10g0089 461 MobiDBLite consensus disorder prediction 7 26 - -
HCH10g0089 461 PANTHER OS07G0668900 PROTEIN 32 382 - -
HCH10g0089 461 CDD STKc_IRAK 93 361 - -
HCH10g0089 461 MobiDBLite consensus disorder prediction 381 399 - -
HCH10g0089 461 MobiDBLite consensus disorder prediction 413 436 - -
HCH10g0089 461 ProSiteProfiles Protein kinase domain profile. 87 364 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0089 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0089 461 ProSitePatterns Protein kinases ATP-binding region signature. 93 116 IPR017441 GO:0005524(InterPro)
HCH10g0089 461 FunFam Serine/threonine-protein kinase PBS1 61 163 - -
HCH10g0089 461 Pfam Protein kinase domain 92 296 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0089 461 MobiDBLite consensus disorder prediction 371 436 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0089 HCH-Chr10:834036 HCH6g1669 HCH-Chr6:49554733 1.30E-170 dispersed
HCH10g0089 HCH-Chr10:834036 HCH7g1120 HCH-Chr7:43960087 4.00E-180 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80972 PF00069 Pkinase 1.80E-44 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0089 K13430 - csv:101219880 827.009