Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0167 ATGGAAATGGAATTGGATAGCATTGAAAATGTGCCATCTTTGGATGTGATTGATGAAGATAATGATGAGAGGCATCAACGTCACTGTCAATTTCCTTCAATTACAAAGCCTTGTATTAACAATAACGAAAACAACAACAACAACAACAACAACAACAACAATAATCCTAGCACCACCAGTGTCCATGAGCTTCTTGAATGTCCTGTTTGTACCAATTCTATGTATCCTCCAATTCATCAGTGTCACAATGGGCATACCATTTGTTCTACATGTAAAACAAGGGTAGACAATCGCTGTCCCACATGCAGACAGGAGCTCGGTGATATCAGGTGTCTAGCATTAGAAAAAATTGCGGAATCACTCAAATTGGCTTGTAAGTACTGCTCCTTTGGGTGTCCAGAGATATTGCCCTACTACAGTAAACTCAAACATGAAGCTGTGTGTTACTTTAGACCATACATATGCCCTTATGCTGGATCAGACTGCCCCATTGATGGGGATATTCCATTCCTTGTTACTCATCTCAGGGATGACCACAAAGTAGACATGCATGCTGGATGCACCTTTAACCATCGTTATGTAAAGACTAATCCATGCGAAGTTGAAAACGCTACATGGATGCTAACGGTCTTCCACTGTTTTGGGCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGTTTGGCACCGGTTTACATGGCATTTCTCCGGTTCATGGGGGATGAAACAGACGCCCGAAACTACAGTTATAGTCTAGAAGTTGGTGGAAATGGTCGGAAACTCATCTTTGAGGGGAACCCTCGAAGCATAAGAGACAACCACAAAAAAGTCAGAGACAGTCACGACGGACTCATTATACAGCGGAACATGGCGCTTTTCTTTTCCGGGGGAGAAAGGAAAGAGCTGAGGCTGCGGATTACAGGCAGGATCTGGAAAGAACAACATAAACAATAA 957 42.63 MEMELDSIENVPSLDVIDEDNDERHQRHCQFPSITKPCINNNENNNNNNNNNNNNPSTTSVHELLECPVCTNSMYPPIHQCHNGHTICSTCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKYCSFGCPEILPYYSKLKHEAVCYFRPYICPYAGSDCPIDGDIPFLVTHLRDDHKVDMHAGCTFNHRYVKTNPCEVENATWMLTVFHCFGQYFCLHFEAFQLGLAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIFEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGGERKELRLRITGRIWKEQHKQ 318
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1377325 1380012 - evm.model.ptg000016l.993 HCH10g0167 552240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0167 318 FunFam E3 ubiquitin-protein ligase SINAT3 117 175 - -
HCH10g0167 318 ProSiteProfiles Zinc finger SIAH-type profile. 120 180 IPR013010 GO:0008270(InterPro)
HCH10g0167 318 SUPERFAMILY RING/U-box 54 108 - -
HCH10g0167 318 FunFam E3 ubiquitin-protein ligase SINAT5-like 176 308 - -
HCH10g0167 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 115 171 IPR013083 -
HCH10g0167 318 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 172 308 IPR008974 GO:0005515(InterPro)
HCH10g0167 318 ProSiteProfiles Zinc finger RING-type profile. 67 103 IPR001841 -
HCH10g0167 318 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 48 310 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
HCH10g0167 318 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 67 102 IPR049548 -
HCH10g0167 318 CDD Sina 181 309 - -
HCH10g0167 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 109 IPR013083 -
HCH10g0167 318 SUPERFAMILY TRAF domain-like 120 311 - -
HCH10g0167 318 Pfam Sina, TRAF-like domain 211 308 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
HCH10g0167 318 CDD RING-HC_SIAHs 65 103 - -
HCH10g0167 318 Pfam Sina, zinc finger 116 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0167 HCH-Chr10:1377325 HCH10g1186 HCH-Chr10:42314135 2.70E-127 dispersed
HCH10g0167 HCH-Chr10:1377325 HCH11g1318 HCH-Chr11:45186364 1.20E-143 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0167 K04506 - csv:101209363 580.867