Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0173 ATGGCGCTTCTTCAAGAGAATCAGGAATGCTTTCAACAAGCTGGGAAAGGTTTGGAAGCAGAGGATCTATATGCTGAATTATGGAAAGCATGTGCTGGGCCTTTGGTGGATGTTCCTCTCATTGAAGAAAGAGTTTTTTATTTTCCTCAAGGTCACATGGAACAATTGGAAGAATCAACAAATCAAGAGCTTAATCATCAAATTCCTCATTTTGATCTTCCTCCCAAGATCCTATGTCGTGTTGTTAACATTCGTTTGCTGGCAGAAAAAGAAACAGACGAGGTTTATGCTCAGATCACTTTATTCCCAGAAGCTGATCAAAGTGAGCCGCAAAGTCCCGATCCTGACCCGCCCGAGCGTACAAGGCCAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACAAGCACACATGGTGGGTTCTCAGTACTCAGGAAACATGCCACTGAATGTCTTCCTCCATTGGATATGAGTCAATCCACCCCAACTCAGGAGTTAGTTGCCAAGGATCTTCATGGATATGAGTGGAAATTTAAGCATATATTCAGAGGTCAACCTCGGAGGCATCTGCTGACCACGGGATGGAGTACGTTTGTTACGTCCAAGAGACTGATTGCGGGAGATGCCTTTGTTTTTTTAAGGGGTGATGATGGGGAACTAAGGGTTGGGGTTCGGCGTCAGGCTCGTCAACAGTGTTCAATGCCTTCCTCTGTGATATCCAGCCATAGCATGCATCTTGGAGTTCTTGCCACGGCTTCTCACGCCGTTCGTACTCATACCTATTTTGTTGTATATTACAAGCCAAGAACTAGTCAATTCATTGTCAGCTTAAACAAATACTTGGAGACGGTTAAAAATGGATTTTCGGTGGGGATGCGCTTCAAGATGAGATTCGAGGGAGAGGACTCTCCAGAGAGAAGATTCACTGGAACTATTGTGGGCGTTGGGGATTTATCTTCACAATGGTCAGATTCTAAATGGCGATCATTAAAGATTCAATGGGATGAACCTGCTACATTTCAACGACCGGAAAGAGTTTCTCCATGGGAGATTGAAGCCTTTGTACCTTCTGCATCCTTGAACTTCACACATCCTCTCGGGAAAAGTAAGAGGTCCCGACCTGTTGATATTCTTCCTGAAATTACGCCCGGTTCAGCTCCTTCAGGCTTTTGGCATCATGGATCAACAATTCCTCATGAACATGAGGTCAAAAACAGTGATAACCAGGTTGTCTGGCCTCTGGGGCAGAGAAAACTTGGTAGCAGTCTCGACGGTAATTGCAGCCAGTTTAATTCGAGGGCACACATGGAAGGCATCTGGCCTTCTCCACTCAATATTTCTCTTAAGCTTTACCCAGATTCAACATGTGAAAGAGATTTTGTTCCAAAACAGCAGCCTCTTCTTTCACCTTATTCTCCTATTGCTGTAAAGCCTAGCAATGAATCTGACATTTCTCTTGGCTGCCGGATATTTGGAATCGATTTGAAAAATAATTCTACTCTGGAGAAAAAATCATCTTGCTCAAATATGGTGGTTGACGATGCCAAAGATCCTGTCGCAGCGACTTCGTTTGAAGCTGATGCCTCTCCAATAGGAAACATCTTGCATCCCTTAAAGGAGCAGCCATCAGAGGCATCACCAAAGGGAATGCTGAACAAGACCATTTCCGATCTACGGTTAAGAACACGTACAAAGGTTCAAATGCAAGGAATCGCTGTAGGTCGCGCTGTTGACTTGACTATGCTGAAAGGGTATGAAGATCTTATTGATGAGCTGGAGAATGTATTCGACATTAAAGGAGAACTTCGTCAACCGAATAAATGGGCCATTGTTTTTACTGATGATGAAAACGACATGATGCTTGTGGGCGATGATCCATGGCCGGAGTTCTGTAAGATGGTGAAGAGGATCTTTATATATTCAAGTGAAGAGGTGAAGAAGATGAGTACAAAAACCAAGCTTCTTTCATCACCGTCCTTCGATTATGAAGTGACCGTTAGCTTGGATTCAGATCGTAAGACGGAATCCTGA 2037 43.74 MALLQENQECFQQAGKGLEAEDLYAELWKACAGPLVDVPLIEERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLFPEADQSEPQSPDPDPPERTRPTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELVAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLIAGDAFVFLRGDDGELRVGVRRQARQQCSMPSSVISSHSMHLGVLATASHAVRTHTYFVVYYKPRTSQFIVSLNKYLETVKNGFSVGMRFKMRFEGEDSPERRFTGTIVGVGDLSSQWSDSKWRSLKIQWDEPATFQRPERVSPWEIEAFVPSASLNFTHPLGKSKRSRPVDILPEITPGSAPSGFWHHGSTIPHEHEVKNSDNQVVWPLGQRKLGSSLDGNCSQFNSRAHMEGIWPSPLNISLKLYPDSTCERDFVPKQQPLLSPYSPIAVKPSNESDISLGCRIFGIDLKNNSTLEKKSSCSNMVVDDAKDPVAATSFEADASPIGNILHPLKEQPSEASPKGMLNKTISDLRLRTRTKVQMQGIAVGRAVDLTMLKGYEDLIDELENVFDIKGELRQPNKWAIVFTDDENDMMLVGDDPWPEFCKMVKRIFIYSSEEVKKMSTKTKLLSSPSFDYEVTVSLDSDRKTES 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1430914 1434697 + evm.model.ptg000016l.987 HCH10g0173 552246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0173 678 FunFam Auxin response factor 558 651 - -
HCH10g0173 678 Pfam AUX/IAA family 608 648 IPR033389 -
HCH10g0173 678 Pfam AUX/IAA family 564 599 IPR033389 -
HCH10g0173 678 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677(InterPro)
HCH10g0173 678 Gene3D - 559 651 - -
HCH10g0173 678 ProSiteProfiles PB1 domain profile. 563 655 IPR053793 -
HCH10g0173 678 FunFam Auxin response factor 126 230 - -
HCH10g0173 678 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 653 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH10g0173 678 SUPERFAMILY DNA-binding pseudobarrel domain 120 257 IPR015300 -
HCH10g0173 678 Gene3D - 289 361 - -
HCH10g0173 678 Pfam Auxin response factor 254 333 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH10g0173 678 CDD B3_DNA 126 228 IPR003340 GO:0003677(InterPro)
HCH10g0173 678 SUPERFAMILY CAD & PB1 domains 563 639 - -
HCH10g0173 678 SMART B3_2 128 230 IPR003340 GO:0003677(InterPro)
HCH10g0173 678 MobiDBLite consensus disorder prediction 102 123 - -
HCH10g0173 678 FunFam Auxin response factor 289 360 - -
HCH10g0173 678 Gene3D - 125 230 IPR015300 -
HCH10g0173 678 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0173 HCH-Chr10:1430914 HCH6g1284 HCH-Chr6:47092980 7.70E-212 dispersed
HCH10g0173 HCH-Chr10:1430914 HCH14g1100 HCH-Chr14:37927991 3.20E-16 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32415 PF02362 B3 8.40E-22 CL0405 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0173 K14486 - csv:101205805 1011.13