Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0180 ATGGCGTCGTCATCGTCAACTTCACCGTGCGCAGCGTGCAAGTTTCTCCGGCGAAAGTGTCAACCGGAATGCGTTTTTGCACCGTATTTTCCACCGGACGACCCGCAGAAATTCGCCAACGTTCACAAAGTGTTCGGCGCAAGCAACGTGACGAAGCTTCTCAATGAATTACACCCTCACCAGAGAGAAGACGCCGTCAATTCCCTCGCTTACGAAGCCAACATGCGTCTCCGCGATCCCGTTTACGGCTGCGTCGGCGTCATCTCTCTTCTCCAACACCAACTATATAAACTCCAAACGGATCTCATTTGTGCTAAATCAGAACTCTCTAAATATCAAAACCTAGGTCTCGCCGGTCACGCCTTCATATCCCCACCGCTGCAGCCGCCTTCCTCCGCCGTCGCTTCCGCCGCAAGTCATGGCACTCGTAGCCACCAGCTAGGGTTTAATTTACCGCATAGTCATTACCATGAACAATTCTTTCCTCGAGATCAACAACAGATGATGATGAGAGGCTTTGAAAGCGCCGGCGGAAACTTCGACGGCGGACTTCTGGCGATGAACGTCACCGCCGCCAGTCATCAGTATCAGCAACCTAGGGCAGCCGGCGGAGACGATCGCCGTGGTACTCTCGATCATTCTTAG 645 53.18 MASSSSTSPCAACKFLRRKCQPECVFAPYFPPDDPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEANMRLRDPVYGCVGVISLLQHQLYKLQTDLICAKSELSKYQNLGLAGHAFISPPLQPPSSAVASAASHGTRSHQLGFNLPHSHYHEQFFPRDQQQMMMRGFESAGGNFDGGLLAMNVTAASHQYQQPRAAGGDDRRGTLDHS 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1483273 1483917 - evm.model.ptg000016l.980 HCH10g0180 552253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0180 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 155 - -
HCH10g0180 214 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
HCH10g0180 214 MobiDBLite consensus disorder prediction 195 214 - -
HCH10g0180 214 Pfam Lateral organ boundaries (LOB) domain 9 104 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0180 HCH-Chr10:1483273 HCH2g0088 HCH-Chr2:6108360 1.90E-47 dispersed
HCH10g0180 HCH-Chr10:1483273 HCH8g1410 HCH-Chr8:48776485 3.60E-46 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32417 PF03195 LOB 2.50E-42 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0180 - - - 0.0