Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0180 | ATGGCGTCGTCATCGTCAACTTCACCGTGCGCAGCGTGCAAGTTTCTCCGGCGAAAGTGTCAACCGGAATGCGTTTTTGCACCGTATTTTCCACCGGACGACCCGCAGAAATTCGCCAACGTTCACAAAGTGTTCGGCGCAAGCAACGTGACGAAGCTTCTCAATGAATTACACCCTCACCAGAGAGAAGACGCCGTCAATTCCCTCGCTTACGAAGCCAACATGCGTCTCCGCGATCCCGTTTACGGCTGCGTCGGCGTCATCTCTCTTCTCCAACACCAACTATATAAACTCCAAACGGATCTCATTTGTGCTAAATCAGAACTCTCTAAATATCAAAACCTAGGTCTCGCCGGTCACGCCTTCATATCCCCACCGCTGCAGCCGCCTTCCTCCGCCGTCGCTTCCGCCGCAAGTCATGGCACTCGTAGCCACCAGCTAGGGTTTAATTTACCGCATAGTCATTACCATGAACAATTCTTTCCTCGAGATCAACAACAGATGATGATGAGAGGCTTTGAAAGCGCCGGCGGAAACTTCGACGGCGGACTTCTGGCGATGAACGTCACCGCCGCCAGTCATCAGTATCAGCAACCTAGGGCAGCCGGCGGAGACGATCGCCGTGGTACTCTCGATCATTCTTAG | 645 | 53.18 | MASSSSTSPCAACKFLRRKCQPECVFAPYFPPDDPQKFANVHKVFGASNVTKLLNELHPHQREDAVNSLAYEANMRLRDPVYGCVGVISLLQHQLYKLQTDLICAKSELSKYQNLGLAGHAFISPPLQPPSSAVASAASHGTRSHQLGFNLPHSHYHEQFFPRDQQQMMMRGFESAGGNFDGGLLAMNVTAASHQYQQPRAAGGDDRRGTLDHS | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1483273 | 1483917 | - | evm.model.ptg000016l.980 | HCH10g0180 | 552253 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0180 | 214 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 7 | 155 | - | - | |
HCH10g0180 | 214 | ProSiteProfiles | LOB domain profile. | 8 | 109 | IPR004883 | - | |
HCH10g0180 | 214 | MobiDBLite | consensus disorder prediction | 195 | 214 | - | - | |
HCH10g0180 | 214 | Pfam | Lateral organ boundaries (LOB) domain | 9 | 104 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0180 | HCH-Chr10:1483273 | HCH2g0088 | HCH-Chr2:6108360 | 1.90E-47 | dispersed | |
HCH10g0180 | HCH-Chr10:1483273 | HCH8g1410 | HCH-Chr8:48776485 | 3.60E-46 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32417 | PF03195 | LOB | 2.50E-42 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0180 | - | - | - | 0.0 |