Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0190 ATGTTGGAGGGTGGTCCTAAATTCACTGGCATGATTGATCTAAATGCTCACGCTTATGATCTATCACAAGGGTTTTACCATAAACTCGGTGAAGGAACCAATATGTCCATTGACAGCTTTGCAAGCTTGCAAACGAGCAATGATGGAGGGTCGGTTGCTATGTCTTTAGATAACAGCAGTGTAGGATCAAATGAATCTCATACTCGCATCTTAAATCACCAAGGCTTGCGACGGCGTGCAAATGACAACTATAGTGTTCAACAGAGTGTGAATCGTCGGGGAAGAGTTACCCATGCATTGAGTGACGATGCACTGGCCCGTGCTTTGTTTGACTGTAATACACCCACTCAGGGTCTTGAAAATTTTGAAAAGTGGACTCTTGATTTAAGGAAGCTTAATATGGGGGAGGCTTTTGCTCAAGGTGCCTTTGGAAAACTCTACCGAGGTACTTATGATGGTGAGGATGTTGCTATCAAGATCTTGGAGAGGCCTGAGAATGACCTCGAAAAAGCTCAGTTAATGGAGCAACAGTATCAGCAGGAGGTCATGATGCTTGCTACTTTGAAGCACCAAAATATAGTTCGGTTTATTGGATCATGTCATAAACCGATGGTTTGGTGCATTGTTACTGAATATGCAAAGGGTGGTTCAGTTAGGCAATTCTTAATGAAGCGACAAAGTCGTTCTGTGCCATTAAAATTGGCTGTCAAGCAAGCTTTGGATGTTGCCAGGGGGATGGAATATGTTCATGGCCTTGGATTGATTCACAGGGATTTAAAGTCAGACAACCTTTTGATTTTTGCAGATAAATCTATCAAGGTTGCGGACTTTGGGGTGGCTCGAATTGAGGTGCAGACAGAGGGAATGACACCAGAAACTGGAACCTACCGCTGGATGGCTCCGGAGATGATCCAACACAGGCCTTATACCCAAAAGGTGGACCTGTATAGCTTTGGTATTGTTCTCTGGGAACTCATAACTGGGATGCTCCCATTCCAGAACATGACAGCCGTGCAAGCTGCATTTGCAGTCGTTAACAAGGGAGTCCGTCCTATTGTACCAAATGATTGCTTACCTGTTCTGAGTGACATCATGACTCGATGCTGGGATCCCAATCCCGATGTCAGGCCATCATTTACTGAAGTTGTCAGAATGCTTGAGAATGCACAGACTGAGATCATGACAACCGTCCGTAAGGCTCGCTTCAGGTGTTGCATTACGCAACCAATGACAACCGACTGA 1242 44.93 MLEGGPKFTGMIDLNAHAYDLSQGFYHKLGEGTNMSIDSFASLQTSNDGGSVAMSLDNSSVGSNESHTRILNHQGLRRRANDNYSVQQSVNRRGRVTHALSDDALARALFDCNTPTQGLENFEKWTLDLRKLNMGEAFAQGAFGKLYRGTYDGEDVAIKILERPENDLEKAQLMEQQYQQEVMMLATLKHQNIVRFIGSCHKPMVWCIVTEYAKGGSVRQFLMKRQSRSVPLKLAVKQALDVARGMEYVHGLGLIHRDLKSDNLLIFADKSIKVADFGVARIEVQTEGMTPETGTYRWMAPEMIQHRPYTQKVDLYSFGIVLWELITGMLPFQNMTAVQAAFAVVNKGVRPIVPNDCLPVLSDIMTRCWDPNPDVRPSFTEVVRMLENAQTEIMTTVRKARFRCCITQPMTTD 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1558820 1564084 - evm.model.ptg000016l.970 HCH10g0190 552263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0190 413 PANTHER SERINE-THREONINE PROTEIN KINASE 75 388 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH10g0190 413 FunFam serine/threonine-protein kinase HT1 215 408 - -
HCH10g0190 413 ProSiteProfiles Protein kinase domain profile. 132 393 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0190 413 SUPERFAMILY Protein kinase-like (PK-like) 118 386 IPR011009 -
HCH10g0190 413 MobiDBLite consensus disorder prediction 53 86 - -
HCH10g0190 413 MobiDBLite consensus disorder prediction 53 70 - -
HCH10g0190 413 PRINTS Tyrosine kinase catalytic domain signature 210 223 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0190 413 PRINTS Tyrosine kinase catalytic domain signature 357 379 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0190 413 PRINTS Tyrosine kinase catalytic domain signature 248 266 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0190 413 PRINTS Tyrosine kinase catalytic domain signature 313 335 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0190 413 PRINTS Tyrosine kinase catalytic domain signature 294 304 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0190 413 CDD STKc_MAP3K-like 139 386 - -
HCH10g0190 413 Pfam Protein tyrosine and serine/threonine kinase 133 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0190 413 Gene3D Phosphorylase Kinase; domain 1 121 214 - -
HCH10g0190 413 Gene3D Transferase(Phosphotransferase) domain 1 215 408 - -
HCH10g0190 413 SMART serkin_6 132 394 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0190 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0190 413 FunFam Serine/threonine-protein kinase isoform 1 122 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0190 HCH-Chr10:1558820 HCH8g1383 HCH-Chr8:48541098 9.50E-80 dispersed
HCH7g1259 HCH-Chr7:45438529 HCH10g0190 HCH-Chr10:1558820 4.60E-20 dispersed
HCH10g0190 HCH-Chr10:1558820 HCH14g0919 HCH-Chr14:36800481 2.80E-79 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80973 PF07714 PK_Tyr_Ser-Thr 9.80E-65 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0190 - - - 0.0