Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0198 ATGGCGATGGCGAGAGGGAATCATAAAGAGGAAACAGTGGCGGTGGCCATAGATAAAGATAAAGGAAGCCATCACGCTTTGAAATTTACGGTGGATCGTCTTCTTAATCGAGGCCAAACCCTCACCTTGATTCATGTTAAACAGAAACCTTTTTCCTTTTCTTCTTCCAATTCAGTGACGAATATGAGCATCGTTTCTGATGCGAGTTATGAAGATGCTTCAATGGCGTATAAACAACAACTTGATAATCAAGCTAGAGATTTCTTCCTTCCTTTCCGTTGCTTATGCACCCGAAAAGATATACAATGCAACGAGGTTGTATTGGATGAAACCGACATAGCAAAAGCATTATTAAACTATGTCAACAAAAATTGGATCGACATTTTGGTACTTGGTGCCCCCTCAAAAAGTGGCATTGTCAGAAGATTCAAGTTCAGCGATGTTCCAAGCAGTGTATCAAAAGGAGCACCAGAGTTCTGCACAGTTTACGTAATTGCAAAAGGAAAAATTTCATCATGCAGACAATCAACGAGTCCACCCCCTCCAAAGCCAGCCTCCATTAACCCACCCCCACGCAACCAGCTCCAGCTCCAGCACCCTCCCACTTCCACCACCGGCCTTCCTTCTCCCCGCAACCAAAATCAACCACCGGTTCATCATCACCCCACTTTTAATTCCCTTCCTTCTTCTCTCAATAATCATAATCATAAGCTTCAGCATCAGTCCACCAATGTCTCTGACTCTCCTCCTGATTCAAACCGAATGCGTTCCATTCCTTCTAAACATCATATTGAGCATATAGTTCCTCCTCCTCGTGCCACGCTTGAAGATATTGAAATCAAGTCACCGTTCACAAGGCCAGGTATAAGAGCTTCAATGAACAAAGGAGGCGAGCCCTCCACGCCGGACTCAGATATATCGTTTGTGAGCAGAGGAAGACCAAGCATTGATCGCATATTTCCACCTCCACCTGTTTGGAGTAATAGTGGCGACTCATTTCGCCCTTCAAATTTCTCTGATAATGACACCTTCGGCTCCTTTTCTCCTGTCCGTGGAATCAACAAGCCCGGTGATAACGCCTCTTTGAATGGCTTTTCTTCAAGCTCCCAAGAAAGTGATTCTTTGTCATGGTCCTCTAATTCACATGTCCAGGACGACGTGGAAGCTGAGATGAGAAGGCTTAAACTCGAACTCAAACAAACCATGGATATGTATAGTACAGCATGCAAAGAAGCACTTGTGGCAAAGCAAAGGGCAAATGAACTGCACCGCTGGAAACAAGAAGAGGAACAAAGACTAGAAGAGGCACGATCGGCGGAGGAAGCTGCATTGGCATTGGTGTTGAAGGAGAGAGAGAAATGCAAAGCAGCAATGCAAGCAGCCGAGGCAGCACAAAGGATTGCAGAGCTTGAAGCTCGAAAAAGAGTCAGTGTTGAAAAGATGGCAGATATGGAAGCCGAGGATGCAAACGCGGCGATTGCAAGTTTTGGGCATGGAGACGTCAGATATAGAAGATACACAATTGAAGAAATTCAGAAAGCTACAGAAGACTTCTCGGAATCTCTAAAAATTGGCGAGGGAGGCTATGGTCCTGTTTATCGAGGTGAACTTGATCACACTCAGGTCGCCATTAAGGTTCTCCGTCCAGATGCGGCTCAAGGTCGTTCACAATTTCAACAAGAGGTTGAAGTATTGAGCTGTATAAGACATCCAAATATGGTTCTATTGTTAGGAGCCTGCCCTGAATTTGGCAGTCTAGTTTACGAGTATATGGCAAATGGAAGCTTAGAAGATTGCCTATTCCGACGAGGTGATGCTCCAGTTCTTCCATGGCAGCTACGGTTCCGAATCGCAGCCGAGATAGCCACCGGACTTCTTTTCCTTCACCAAGCTAAACCCGAACCCATCGTACATCGCGACCTCAAACCAGGGAACATTTTGCTTGACCGGAATTATGTGAGTAAGATCAGTGATGTTGGCTTAGCCAGGCTTGTTCCACCATCTGTCGCCAATGCCGTGACTCAATATCGGATGACGGTAACGGCAGGGACTTTCTGCTATATCGATCCAGAATACCAGCAAACCGGATTGCTGGGAATAAAATCAGACATTTACTCGCTTGGAATTATGCTTCTACAAATAATCACATCGAGGTCGCCAATGGGATTGACTCACGCCGTAGAAAGGTCGATAGAGAGGGGAACTTTTGCTGAGATGCTTGATCCAGAGGTTCCAGACTGGCCAGTGGAAGAGGCACAAAAGTTTGCTGAACTGTCACTTCAGTGTGCAGAAATGAGGAAAAGGGATAGGCCAGACCTTGGGAAGGTGGTGCTACCTGTACTTAACAGATTGAGAGCAATGGCTGAAGAAAGCATGGGAAACTCATTCCCAATGTGCATGGGCCTTAGTGGTGGTAGTGCATCATCGTCCTCATATCCAAGCCAGGTTTCATCTTCTCAAGAGATCACAAGCCCTCCTCAGGTACACAGCGGTTCATGGTCTGGGAGCTCGAGGAGCCCTTCAAGCAGCACATCATCATTTTCAGGAAGAAGACCATATTGGATGGACTAA 2571 46.05 MAMARGNHKEETVAVAIDKDKGSHHALKFTVDRLLNRGQTLTLIHVKQKPFSFSSSNSVTNMSIVSDASYEDASMAYKQQLDNQARDFFLPFRCLCTRKDIQCNEVVLDETDIAKALLNYVNKNWIDILVLGAPSKSGIVRRFKFSDVPSSVSKGAPEFCTVYVIAKGKISSCRQSTSPPPPKPASINPPPRNQLQLQHPPTSTTGLPSPRNQNQPPVHHHPTFNSLPSSLNNHNHKLQHQSTNVSDSPPDSNRMRSIPSKHHIEHIVPPPRATLEDIEIKSPFTRPGIRASMNKGGEPSTPDSDISFVSRGRPSIDRIFPPPPVWSNSGDSFRPSNFSDNDTFGSFSPVRGINKPGDNASLNGFSSSSQESDSLSWSSNSHVQDDVEAEMRRLKLELKQTMDMYSTACKEALVAKQRANELHRWKQEEEQRLEEARSAEEAALALVLKEREKCKAAMQAAEAAQRIAELEARKRVSVEKMADMEAEDANAAIASFGHGDVRYRRYTIEEIQKATEDFSESLKIGEGGYGPVYRGELDHTQVAIKVLRPDAAQGRSQFQQEVEVLSCIRHPNMVLLLGACPEFGSLVYEYMANGSLEDCLFRRGDAPVLPWQLRFRIAAEIATGLLFLHQAKPEPIVHRDLKPGNILLDRNYVSKISDVGLARLVPPSVANAVTQYRMTVTAGTFCYIDPEYQQTGLLGIKSDIYSLGIMLLQIITSRSPMGLTHAVERSIERGTFAEMLDPEVPDWPVEEAQKFAELSLQCAEMRKRDRPDLGKVVLPVLNRLRAMAEESMGNSFPMCMGLSGGSASSSSYPSQVSSSQEITSPPQVHSGSWSGSSRSPSSSTSSFSGRRPYWMD 856
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1618982 1624092 + evm.model.ptg000016l.962 HCH10g0198 552271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0198 856 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0198 856 SUPERFAMILY Protein kinase-like (PK-like) 502 777 IPR011009 -
HCH10g0198 856 Coils Coil 460 487 - -
HCH10g0198 856 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 11 164 - -
HCH10g0198 856 CDD STK_N 12 168 - -
HCH10g0198 856 PANTHER OS02G0152300 PROTEIN 13 830 IPR051348 -
HCH10g0198 856 SMART serkin_6 518 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0198 856 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 492 590 - -
HCH10g0198 856 FunFam U-box domain-containing protein 51 591 791 - -
HCH10g0198 856 MobiDBLite consensus disorder prediction 190 255 - -
HCH10g0198 856 Gene3D Transferase(Phosphotransferase) domain 1 591 795 - -
HCH10g0198 856 MobiDBLite consensus disorder prediction 172 259 - -
HCH10g0198 856 Gene3D HUPs 11 167 IPR014729 -
HCH10g0198 856 MobiDBLite consensus disorder prediction 359 384 - -
HCH10g0198 856 MobiDBLite consensus disorder prediction 807 850 - -
HCH10g0198 856 Gene3D Phosphorylase Kinase; domain 1 499 590 - -
HCH10g0198 856 MobiDBLite consensus disorder prediction 358 384 - -
HCH10g0198 856 Coils Coil 384 404 - -
HCH10g0198 856 Pfam Protein kinase domain 521 772 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0198 856 Pfam Universal stress protein family 12 157 IPR006016 -
HCH10g0198 856 Coils Coil 426 446 - -
HCH10g0198 856 ProSiteProfiles Protein kinase domain profile. 518 781 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0198 856 MobiDBLite consensus disorder prediction 286 305 - -
HCH10g0198 856 MobiDBLite consensus disorder prediction 807 856 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0198 HCH-Chr10:1618982 HCH4g0366 HCH-Chr4:2415927 1.30E-216 dispersed
HCH10g0198 HCH-Chr10:1618982 HCH12g0288 HCH-Chr12:1615446 3.60E-222 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80975 PF07714 PK_Tyr_Ser-Thr 9.60E-38 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0198 - - - 0.0