Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g0201 | ATGGCTTCTTCTGCAGCAAAATCCAATACCCTTTACTGCATTATATCTGCAATCCTTGTCATCTCACTCACTAAGTTCATTCTTCCAAAATTCTCATCGTCCATCTCTCCAAACATTTTCCCTATCACCATATTCCTTGTTCCACTTATTACTTACATAATCTCTTCCATTTCCACCTCCTCCAAGCTTCCTCCAGGCCCCCTTTCTATTCCAATATTTGGCAACTGGCTCCAAGTCGGCAACGACCTCAACCACCGCCTTCTCGCTTCCTTGTCTCAAAGATTTGGCTCTATATTCCTCTTGAAACTTGGCTCCAAGAACCTTGTGGTGGTGTCTGATGCTGAGCTTGCAAGCCAAGTCCTTCATGCACAAGGAGTAGAATTCGGTTCCCGCCCTCGAAATGTCGTGTTCGATATCTTCACCGGTAACGGTCAAGATATGGTGTTCACAGTTTACGGCGATCATTGGCGTAAGATGCGTAGGATTATGACCTTGCCGTTTTTCACTAACAAAGTGGTGCACAATTATAGTGGCATGTGGGAGGATGAGATGGACTTGGTGGTTCATGACCTTACCATAAACAAGAAGGTGCAATCAGAAGGGATAGTCATAAGAAAGCGTTTGCAGCTCATGCTATACAATATCATGTATAGAATGATGTTTGATGCAAAGTTTGAGTCTCAAGAAGATCCTTTGTTCATTGAAGCAACTCGATTTAACTCCGAAAGGAGCCGGTTAGCGCAAAGTTTCGAATATAACTATGGTGATTTTATTCCTCTGCTTAGACCCTTCTTGAGAGGGTACTTGAACAAGTGCAAGGATTTGCAAAGTAGAAGGTTGGCATTCTTCAACAACAACTATGTTGAGAAGAGAAGGAAAATAATGGCAGCCAATGGAGATAAGCACAAGATAACTTGTGCCATGGATCATATAATAGATGCTCAGTTGAAGGGTGAAATCAGCGAAGCGAATGTGATTTACATTGTGGAAAACATCAATGTTGCTGCGATAGAGACGACTCTCTGGTCGATGGAATGGGCAATAGCCGAGCTCGTGAACCATCCGGATATCCAACAAAAAATCCGAGACGAAATCTCCACGGTCCTAAAGGGAAAGCAAGTGACCGAATCCAGCCTTAATGAATTGCCTTACTTGCAAGCCACGGTGAAAGAAACATTGAGGCTGCACACACCAATACCATTATTAGTACCACATATGAACTTAGAAGAAGCAAAGCTTGGAGGCTATACAATTCCCAAAGAGTCAAAGGTGGTGGTGAATGCATGGTGGCTGGCTAACAACCCTGCATGGTGGAAAGATCCAGAGGAGTTCAGGCCAGAGAGGTTCTTCGAAGAAGAAAGCGGCACAGAAGCCGTCGCAGGAGGCAAAGTCGATTATCGATTCTTACCCTTTGGAGTTGGAAGGAGAAGTTGCCCTGGCATTGTTTTGGCAATGCCAATTCTGGGGCTGATTGTTGCTAAATTAGTAACCAGTTTTGAAATGAAGCCTCCAAGTGGGATGGAGAAAATTGATGTCAGTGAGAAAGGAGGACAGTTTAGTCTGCATATAGCCAACCACTCAACAGTCGTCTTTGATCCCGTAACGGTTTAA | 1611 | 43.95 | MASSAAKSNTLYCIISAILVISLTKFILPKFSSSISPNIFPITIFLVPLITYIISSISTSSKLPPGPLSIPIFGNWLQVGNDLNHRLLASLSQRFGSIFLLKLGSKNLVVVSDAELASQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTVYGDHWRKMRRIMTLPFFTNKVVHNYSGMWEDEMDLVVHDLTINKKVQSEGIVIRKRLQLMLYNIMYRMMFDAKFESQEDPLFIEATRFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQSRRLAFFNNNYVEKRRKIMAANGDKHKITCAMDHIIDAQLKGEISEANVIYIVENINVAAIETTLWSMEWAIAELVNHPDIQQKIRDEISTVLKGKQVTESSLNELPYLQATVKETLRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPAWWKDPEEFRPERFFEEESGTEAVAGGKVDYRFLPFGVGRRSCPGIVLAMPILGLIVAKLVTSFEMKPPSGMEKIDVSEKGGQFSLHIANHSTVVFDPVTV | 536 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1634191 | 1635918 | + | evm.model.ptg000016l.959 | HCH10g0201 | 552274 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g0201 | 536 | PRINTS | P450 superfamily signature | 335 | 352 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | P450 superfamily signature | 469 | 478 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | P450 superfamily signature | 387 | 398 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | Pfam | Cytochrome P450 | 64 | 525 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | FunFam | Trans-cinnamate 4-monooxygenase | 54 | 528 | - | - | |
| HCH10g0201 | 536 | PRINTS | E-class P450 group I signature | 344 | 370 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | E-class P450 group I signature | 427 | 451 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | E-class P450 group I signature | 116 | 137 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | E-class P450 group I signature | 211 | 229 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | E-class P450 group I signature | 386 | 404 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | E-class P450 group I signature | 468 | 478 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | E-class P450 group I signature | 478 | 501 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | E-class P450 group I signature | 92 | 111 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PRINTS | E-class P450 group I signature | 324 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 471 | 480 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH10g0201 | 536 | Gene3D | Cytochrome P450 | 57 | 530 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0201 | 536 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 44 | 535 | - | GO:0004497(PANTHER) | |
| HCH10g0201 | 536 | SUPERFAMILY | Cytochrome P450 | 64 | 516 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0201 | HCH-Chr10:1634191 | HCH10g0203 | HCH-Chr10:1641361 | 4.70E-265 | dispersed | |
| HCH10g0201 | HCH-Chr10:1634191 | HCH10g0202 | HCH-Chr10:1637526 | 6.60E-283 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g0201 | K00487 | - | csv:101204747 | 931.398 |