Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0203 ATGGCTCATTCTGCAGCAAAACTTGGCTTTTTTGCTTCCATTTCTGCTATACCATTTGTCTTACTGACTAAATTCATGTTCCCTAGTCTGTTCTTAACCATCCCTCCAACCATCCTTCCTATCACTCTTTCTTTAGCTCTCTTTGTTGCTTTCATCTTCTTTTCCATATCCAATTCCTCCAAACTTCCTCCTGGTCCTATCCCTGTCCCAATCTTTGGCAACTGGCTGCAAGTTGGCAATGACCTCAACCACTGCCTTCTTGCTTCTTTGGCAAGGAAATATGGCTCCGTGTTTCGCCTCAAACTTGGTTACAAGAACCTAGTTGTGGTGTCTGATGCCGAGCTTGCCAACCAAGTTCTCCATGCTCAAGGTGTAGAATTCGGCTCTCGCCCTCGAAATGTCGTGTTTGACATTTTCACTGGTAATGGACAAGACATGGTGTTCACTATCTATGGCGATCACTGGCGTAAAATGCGTAGAATCATGACGCTACCGTTTTTTACAAACAAAGTGGTGCATAATTACAGCAGTATGTGGGAGGAAGAGATGGATTTGGTTGTTCGGGACCTTAAGAATAATCCAAAGGTGAAGTTTGAAGGGCTAGTTATAAGGAAGCGCTTGCAATTGATGTTGTACAATATCATGTACAGAATGATGTTTGATGCTAAATTTGAATCACAAGATGATCCTTTGTTTATTGAGGCCACTAAATTTAACTCGGAAAGGAGTCGATTGGCGCAAAGTTTCGAGTATAACTATGGAGATTTCATTCCTCTGCTCAGACCCTTTTTGAGGGGCTACTTGAACAAGTGCAAGGATTTGCAGAGCAGGAGGTTGGCATTTTTCAACACAAACTATGTTGAGAAAAGAAGAGCAATAATGGCTGCCAATGGAAACAAGCACAAGATCAACTGTGCAATGGATCATATAATAGATGCTCAGCTAAAAGGAGAAATCAGTGAAGAGAATGTCATTTACATTGTGGAAAATATCAATGTTGCAGCAATAGAGACAACACTTTGGTCAATGGAATGGGCAATAGCCGAGTTGGTGAACCATCCGGAAATCCAACGAAAAATCCGAGAGGAAATCGCTACCGTCCTAAAAGGAAAGGAAGTCACTGAATCAAACCTAAATGAATTGCCATACTTGCAAGCCACAGTGAAAGAGGCACTGAGGCTGCACACACCAATACCATTATTGGTACCACATATGAACTTAGAAGAAGCAAAGCTCGGAGGCTATACGATTCCGAAAGAGTCAAAGGTGGTGGTGAATGCATGGTGGCTGGCCAACAACCCGGAATGGTGGAAAAATCCAGAGGAGTTCAGGCCAGAGAGGTTCTTTGAAGAAGAAAGTGGCATAGAAGCAGTTGCAGGAGGAAAAGTTGATTTTAGATTCTTACCCTTTGGAGTTGGAAGGAGAAGTTGTCCTGGGATTGTCTTGGCAATGCCAATCTTGGGGCTCATTGTTGCTAAATTGGTGACTAATTTTGAAATGAAGCCTCCAAGTGGGATGGAGAAGATTGATGTGAGTGAAAAAGGAGGACAGTTTAGTTTGCATATCGCCAATCACTCAACGGTGGTGTTCAAACCGATAGCTGCTTAA 1608 42.72 MAHSAAKLGFFASISAIPFVLLTKFMFPSLFLTIPPTILPITLSLALFVAFIFFSISNSSKLPPGPIPVPIFGNWLQVGNDLNHCLLASLARKYGSVFRLKLGYKNLVVVSDAELANQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTIYGDHWRKMRRIMTLPFFTNKVVHNYSSMWEEEMDLVVRDLKNNPKVKFEGLVIRKRLQLMLYNIMYRMMFDAKFESQDDPLFIEATKFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQSRRLAFFNTNYVEKRRAIMAANGNKHKINCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQRKIREEIATVLKGKEVTESNLNELPYLQATVKEALRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGIEAVAGGKVDFRFLPFGVGRRSCPGIVLAMPILGLIVAKLVTNFEMKPPSGMEKIDVSEKGGQFSLHIANHSTVVFKPIAA 535
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
10 1641361 1643068 + evm.model.ptg000016l.957 HCH10g0203 552276
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0203 535 PANTHER TRANS-CINNAMATE 4-MONOOXYGENASE 44 534 - GO:0004497(PANTHER)
HCH10g0203 535 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 470 479 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
HCH10g0203 535 PRINTS E-class P450 group I signature 91 110 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS E-class P450 group I signature 210 228 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS E-class P450 group I signature 385 403 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS E-class P450 group I signature 323 340 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS E-class P450 group I signature 426 450 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS E-class P450 group I signature 477 500 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS E-class P450 group I signature 115 136 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS E-class P450 group I signature 343 369 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS E-class P450 group I signature 467 477 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS P450 superfamily signature 386 397 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS P450 superfamily signature 468 477 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 PRINTS P450 superfamily signature 334 351 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 Pfam Cytochrome P450 63 524 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 FunFam Trans-cinnamate 4-monooxygenase 55 527 - -
HCH10g0203 535 Gene3D Cytochrome P450 55 527 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
HCH10g0203 535 SUPERFAMILY Cytochrome P450 63 523 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0201 HCH-Chr10:1634191 HCH10g0203 HCH-Chr10:1641361 4.70E-265 dispersed
HCH10g0203 HCH-Chr10:1641361 HCH2g0975 HCH-Chr2:53060292 1.10E-189 dispersed
HCH10g0202 HCH-Chr10:1637526 HCH10g0203 HCH-Chr10:1641361 4.60E-268 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0203 K00487 - csv:101205775 970.304