Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g0203 | ATGGCTCATTCTGCAGCAAAACTTGGCTTTTTTGCTTCCATTTCTGCTATACCATTTGTCTTACTGACTAAATTCATGTTCCCTAGTCTGTTCTTAACCATCCCTCCAACCATCCTTCCTATCACTCTTTCTTTAGCTCTCTTTGTTGCTTTCATCTTCTTTTCCATATCCAATTCCTCCAAACTTCCTCCTGGTCCTATCCCTGTCCCAATCTTTGGCAACTGGCTGCAAGTTGGCAATGACCTCAACCACTGCCTTCTTGCTTCTTTGGCAAGGAAATATGGCTCCGTGTTTCGCCTCAAACTTGGTTACAAGAACCTAGTTGTGGTGTCTGATGCCGAGCTTGCCAACCAAGTTCTCCATGCTCAAGGTGTAGAATTCGGCTCTCGCCCTCGAAATGTCGTGTTTGACATTTTCACTGGTAATGGACAAGACATGGTGTTCACTATCTATGGCGATCACTGGCGTAAAATGCGTAGAATCATGACGCTACCGTTTTTTACAAACAAAGTGGTGCATAATTACAGCAGTATGTGGGAGGAAGAGATGGATTTGGTTGTTCGGGACCTTAAGAATAATCCAAAGGTGAAGTTTGAAGGGCTAGTTATAAGGAAGCGCTTGCAATTGATGTTGTACAATATCATGTACAGAATGATGTTTGATGCTAAATTTGAATCACAAGATGATCCTTTGTTTATTGAGGCCACTAAATTTAACTCGGAAAGGAGTCGATTGGCGCAAAGTTTCGAGTATAACTATGGAGATTTCATTCCTCTGCTCAGACCCTTTTTGAGGGGCTACTTGAACAAGTGCAAGGATTTGCAGAGCAGGAGGTTGGCATTTTTCAACACAAACTATGTTGAGAAAAGAAGAGCAATAATGGCTGCCAATGGAAACAAGCACAAGATCAACTGTGCAATGGATCATATAATAGATGCTCAGCTAAAAGGAGAAATCAGTGAAGAGAATGTCATTTACATTGTGGAAAATATCAATGTTGCAGCAATAGAGACAACACTTTGGTCAATGGAATGGGCAATAGCCGAGTTGGTGAACCATCCGGAAATCCAACGAAAAATCCGAGAGGAAATCGCTACCGTCCTAAAAGGAAAGGAAGTCACTGAATCAAACCTAAATGAATTGCCATACTTGCAAGCCACAGTGAAAGAGGCACTGAGGCTGCACACACCAATACCATTATTGGTACCACATATGAACTTAGAAGAAGCAAAGCTCGGAGGCTATACGATTCCGAAAGAGTCAAAGGTGGTGGTGAATGCATGGTGGCTGGCCAACAACCCGGAATGGTGGAAAAATCCAGAGGAGTTCAGGCCAGAGAGGTTCTTTGAAGAAGAAAGTGGCATAGAAGCAGTTGCAGGAGGAAAAGTTGATTTTAGATTCTTACCCTTTGGAGTTGGAAGGAGAAGTTGTCCTGGGATTGTCTTGGCAATGCCAATCTTGGGGCTCATTGTTGCTAAATTGGTGACTAATTTTGAAATGAAGCCTCCAAGTGGGATGGAGAAGATTGATGTGAGTGAAAAAGGAGGACAGTTTAGTTTGCATATCGCCAATCACTCAACGGTGGTGTTCAAACCGATAGCTGCTTAA | 1608 | 42.72 | MAHSAAKLGFFASISAIPFVLLTKFMFPSLFLTIPPTILPITLSLALFVAFIFFSISNSSKLPPGPIPVPIFGNWLQVGNDLNHCLLASLARKYGSVFRLKLGYKNLVVVSDAELANQVLHAQGVEFGSRPRNVVFDIFTGNGQDMVFTIYGDHWRKMRRIMTLPFFTNKVVHNYSSMWEEEMDLVVRDLKNNPKVKFEGLVIRKRLQLMLYNIMYRMMFDAKFESQDDPLFIEATKFNSERSRLAQSFEYNYGDFIPLLRPFLRGYLNKCKDLQSRRLAFFNTNYVEKRRAIMAANGNKHKINCAMDHIIDAQLKGEISEENVIYIVENINVAAIETTLWSMEWAIAELVNHPEIQRKIREEIATVLKGKEVTESNLNELPYLQATVKEALRLHTPIPLLVPHMNLEEAKLGGYTIPKESKVVVNAWWLANNPEWWKNPEEFRPERFFEEESGIEAVAGGKVDFRFLPFGVGRRSCPGIVLAMPILGLIVAKLVTNFEMKPPSGMEKIDVSEKGGQFSLHIANHSTVVFKPIAA | 535 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1641361 | 1643068 | + | evm.model.ptg000016l.957 | HCH10g0203 | 552276 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g0203 | 535 | PANTHER | TRANS-CINNAMATE 4-MONOOXYGENASE | 44 | 534 | - | GO:0004497(PANTHER) | |
| HCH10g0203 | 535 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 470 | 479 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| HCH10g0203 | 535 | PRINTS | E-class P450 group I signature | 91 | 110 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | E-class P450 group I signature | 210 | 228 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | E-class P450 group I signature | 385 | 403 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | E-class P450 group I signature | 323 | 340 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | E-class P450 group I signature | 426 | 450 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | E-class P450 group I signature | 477 | 500 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | E-class P450 group I signature | 115 | 136 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | E-class P450 group I signature | 343 | 369 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | E-class P450 group I signature | 467 | 477 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | P450 superfamily signature | 386 | 397 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | P450 superfamily signature | 468 | 477 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | PRINTS | P450 superfamily signature | 334 | 351 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | Pfam | Cytochrome P450 | 63 | 524 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | FunFam | Trans-cinnamate 4-monooxygenase | 55 | 527 | - | - | |
| HCH10g0203 | 535 | Gene3D | Cytochrome P450 | 55 | 527 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| HCH10g0203 | 535 | SUPERFAMILY | Cytochrome P450 | 63 | 523 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0201 | HCH-Chr10:1634191 | HCH10g0203 | HCH-Chr10:1641361 | 4.70E-265 | dispersed | |
| HCH10g0203 | HCH-Chr10:1641361 | HCH2g0975 | HCH-Chr2:53060292 | 1.10E-189 | dispersed | |
| HCH10g0202 | HCH-Chr10:1637526 | HCH10g0203 | HCH-Chr10:1641361 | 4.60E-268 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g0203 | K00487 | - | csv:101205775 | 970.304 |