Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0205 ATGAAAACGCCGGCGAATAGTGCCGGTTCCGCCGCACCTAATCCTTGCGAAGGTAGTTTGGAGAAGAAAATTATAAATCCAGAATTATGGCAAGCGTGCGCCGGACCATTGGTGAATTTGCCGCCGGCAGGCTACCACGTGGTCTATTTCCCTCAAGGCCACAGTGAGCAGGTTGCAGCATCTTTGAAGAAAGATGTGGATGCTCAAATTCCAAACTATCCAAATCTTCCTTCTAAGTTACTATGTCTCCTTCATAATGTCACCTTACATGCCGACCCGGAAACGGATGAAGTATATGCTCAAATGACATTACAACCAGTTCCTTCTTTTGACAGGGAGGCATTGTTGAGATCTGATTTAGCACTCAAGTCTAATAAGCCACAACCAGAGTTTTTCTGTAAAACATTGACAGCAAGTGACACAAGCACTCATGGTGGGTTCTCCGTGCCACGCCGTGCTGCAGAGAAGATATTCCCCTCTCTTGATTTCTCCATGCAACCACCTGCCCAAGAGCTTAGTGCTAAGGATTTGCATGATAATGTATGGACTTTCCGCCACATATATCGAGGACAACCCAAGCGCCATTTGCTGACGACAGGATGGAGCCTATTTGTTAGTGGAAAGAGGCTTCTTGCTGGTGATTCGGTTTTGTTCATAAGAGATGACAAACACCAGCTTCTTTTGGGCATTAGACGGGCGAACAGGCAGCCCACGAACTTATCATCATCAGTGTTGTCAACTGATAGTATGCATATCGGTATTCTTGCAGCTGCAGCCCATGCTGCTGCAAACAATAGCCCTTTCACCGTGTTCTACAATCCTCGGGCAAGTCCTTCAGAATTTATCATTCCTCTTGCTAAATACTACAAGGCAGTGTCTGCAAACCAAATATCACTTGGTATGCGCTTCAGGATGATGTTTGAGACCGAAGAGTCTGGAACGAGAAGGTACATGGGCACTATCACAGGTATAAGTGATCTTGACACGGTCAGATGGAAAGGCTCACAATGGCGTAATTTGCAGGTTGGGTGGGATGAGTCGACTGGTGGGGAAAGACGAAATCGAGTTTCAATATGGGAGATTGAACCAGTAGTTGCTCCATTTTTTATTTGCCCCCCTCCTTTTTTGAGACCAAAGCGCCCAAGGCAACCAGGAATGCCAGATGATGAATCCTCTGATTTAGATAGCATTTTTAAAAGAACAATGTTTGGTGATGATTTCTGCATGAAAGATCCTCAGGGATATCAAGGCCTAAGCTTGGTTCAATGGATGAACATGCAGCAAAGTCCTTCAATGTGTAATTCGCTGCAGCCAAATTACATGCATTCATTTTCTGGGTCTATGCTACAGAACCTTGGTGGAGCGGATATTTCTCGGCAGTTGGGCATGTCGGCAGCACAAGTTCCTCAGTCCAACAACATTCAGTTTGGTGCCCAAAGGCTTCTTTCTCAAGGTCAACAGTTAGATCAGCTACCTAAGTTACCATCAAGTTTGAGTTCATTAGGATCTGTTGTACAGCAACCACAGCAGTTGGATGATATATCTCAGCAGACACGGCAAAATTTGATGAACCAAAGCTCGATCTCGAGTCAAATTCAGGCCCAAATAATGCAGCCTCATGCTAATGGTCTTCTACAACAGCAACCCTCGCTGCAAAACCAACAGCTTCAGAGAAATGTCCCTCCGAATATGCAGATGCAGCCACAGCAGCAGCAGCAACAGCAGCATCAGCATCAGCAAATTCTGGGTCAGAATCAACAGCAGAATATAACTCAGTCTCAGCTCCCTGATCAATTAAACAATCACTTGCAAATGTCTGACAATCAGGTCCAAATTCAAATGTTACAAAAGCTTCAGCAGCAGCAATCTCTTTTGGGCCAGCAGGCTGCTCTACAGCCTACTCAAATCACCCAACTACCAGATCAGCATAGACAGCTGGTAGATGCGTCCCAAAGCTTCTCCAGGTCTTTGTCATCTAGCCAAATGCTTGAGATGCCCCGGTCTACCCCAGCTGCCATCACTCAGTCAAACGCATCATCGCAGCAGACAGTGAAGAGCAATAACCAGACATCTAATCAATTCTCTAATCAACACTTGCAGCCAAAACTCCCACAACTACAACAACCCCCTCTATCAGCTCTGCTTCCTGACATGTCTCGGCCCATGGGACTTCCTCCAACCGCAACAAACAATCAGCTCTCTGCAACTACTAGCAGTATAGTAACAGGGGTAGCAGGGGCTGGTCAATCTGGAATTACTGATGATATCCCATCTTGCTCCACTTCACCTTCCACAAACAATTGTTCCAATGTTGTTCAACCATTAACTAATGGAAGGGTTCGTCGAAGCGCAGGATTGGTTGAGGATGTGGCTCAATCTGCTGCATCAATCTTCAGTCATCTGGAAACCTTGTCACCAAATGCTAATTTAGTTAAAGATTTGCCGCCGAGGACTACAGTTAAACCCTCACTGAATATTTCCAAGAATCAAAGTCATGGAATTTTTGCACAACAAACTTTCTTGAGTGGTGCTGTTCCTCAGGCCGATTTCTTGGACACTTCATCTTCCACAACCTCAGCTTGCCTTTCTCAGAACGAAGCTCAGTTGCAGCAGAATAACATGATGTCTTTCAATTCACAACCACCAATGTTGTTCAGAGACAGTAGTCAGGATTTGGAAGTACCAGCCGATCTCCACAACATTCCGTACGAGACTAATATTGAAGGACAATTGGTAGGACAGTTAAACTCTGATCCTTTGTTAAACAAGGGCATTGCAGGATTGGAGAAAGATTTCTCTAATAATTTTTCTTCTGGGGGCATGCTCTCCACCTATGAGGCACATAAAGATCCTCAACAGGAAATTTCTTCCTCTCTAGTTTCCCAGTCATTTGGTATTCCAGACATGGCATTTGATCCCATGGATTCCCCAATCAACGATACCACCTTCTTGAATAGAGGTCAGTGGGCACCTCCGCCTCCATTTCAGCGTATGCGGACCTACACCAAGGTGTACAAACGTGGAGCTGTTGGGAGATCCATCGATATTACTCGTTACTCGGGTTATGACGAGCTTAAGCATGACCTTGCTCGTAGGTTCGGTATTGAGGGACAGCTAGAGGACAGGCAAAAGATTGGCTGGAAACTTGTTTATGTTGATCACGAAAATGACGTTTTACTAGTAGGAGACGACCCTTGGGAGGATTTCGTGAACTGTGTCCGCAGCATCAAGATCCTCTCCCCACAGGAAGTCCAACAAATGAGCCTGGATGGAGATTTTGGAAATGGGGTCTTATCAAACCAAGCCTGCAGCAGCTCTGATGGTGGAAATGCTTAA 3336 45.53 MKTPANSAGSAAPNPCEGSLEKKIINPELWQACAGPLVNLPPAGYHVVYFPQGHSEQVAASLKKDVDAQIPNYPNLPSKLLCLLHNVTLHADPETDEVYAQMTLQPVPSFDREALLRSDLALKSNKPQPEFFCKTLTASDTSTHGGFSVPRRAAEKIFPSLDFSMQPPAQELSAKDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLLAGDSVLFIRDDKHQLLLGIRRANRQPTNLSSSVLSTDSMHIGILAAAAHAAANNSPFTVFYNPRASPSEFIIPLAKYYKAVSANQISLGMRFRMMFETEESGTRRYMGTITGISDLDTVRWKGSQWRNLQVGWDESTGGERRNRVSIWEIEPVVAPFFICPPPFLRPKRPRQPGMPDDESSDLDSIFKRTMFGDDFCMKDPQGYQGLSLVQWMNMQQSPSMCNSLQPNYMHSFSGSMLQNLGGADISRQLGMSAAQVPQSNNIQFGAQRLLSQGQQLDQLPKLPSSLSSLGSVVQQPQQLDDISQQTRQNLMNQSSISSQIQAQIMQPHANGLLQQQPSLQNQQLQRNVPPNMQMQPQQQQQQQHQHQQILGQNQQQNITQSQLPDQLNNHLQMSDNQVQIQMLQKLQQQQSLLGQQAALQPTQITQLPDQHRQLVDASQSFSRSLSSSQMLEMPRSTPAAITQSNASSQQTVKSNNQTSNQFSNQHLQPKLPQLQQPPLSALLPDMSRPMGLPPTATNNQLSATTSSIVTGVAGAGQSGITDDIPSCSTSPSTNNCSNVVQPLTNGRVRRSAGLVEDVAQSAASIFSHLETLSPNANLVKDLPPRTTVKPSLNISKNQSHGIFAQQTFLSGAVPQADFLDTSSSTTSACLSQNEAQLQQNNMMSFNSQPPMLFRDSSQDLEVPADLHNIPYETNIEGQLVGQLNSDPLLNKGIAGLEKDFSNNFSSGGMLSTYEAHKDPQQEISSSLVSQSFGIPDMAFDPMDSPINDTTFLNRGQWAPPPPFQRMRTYTKVYKRGAVGRSIDITRYSGYDELKHDLARRFGIEGQLEDRQKIGWKLVYVDHENDVLLVGDDPWEDFVNCVRSIKILSPQEVQQMSLDGDFGNGVLSNQACSSSDGGNA 1111
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1652740 1659516 - evm.model.ptg000016l.955 HCH10g0205 552278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0205 1111 Gene3D - 296 367 - -
HCH10g0205 1111 Pfam Auxin response factor 258 341 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH10g0205 1111 SMART B3_2 132 234 IPR003340 GO:0003677(InterPro)
HCH10g0205 1111 MobiDBLite consensus disorder prediction 647 713 - -
HCH10g0205 1111 CDD B3_DNA 131 232 IPR003340 GO:0003677(InterPro)
HCH10g0205 1111 SUPERFAMILY DNA-binding pseudobarrel domain 121 261 IPR015300 -
HCH10g0205 1111 Pfam B3 DNA binding domain 132 233 IPR003340 GO:0003677(InterPro)
HCH10g0205 1111 Gene3D - 130 233 IPR015300 -
HCH10g0205 1111 FunFam Auxin response factor 130 234 - -
HCH10g0205 1111 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 25 1090 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
HCH10g0205 1111 SUPERFAMILY CAD & PB1 domains 1012 1078 - -
HCH10g0205 1111 ProSiteProfiles B3 DNA-binding domain profile. 132 234 IPR003340 GO:0003677(InterPro)
HCH10g0205 1111 MobiDBLite consensus disorder prediction 647 707 - -
HCH10g0205 1111 MobiDBLite consensus disorder prediction 563 589 - -
HCH10g0205 1111 FunFam Auxin response factor 296 367 - -
HCH10g0205 1111 Pfam AUX/IAA family 1000 1084 IPR033389 -
HCH10g0205 1111 Gene3D - 995 1088 - -
HCH10g0205 1111 ProSiteProfiles PB1 domain profile. 999 1084 IPR053793 -
HCH10g0205 1111 FunFam Auxin response factor 994 1088 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0205 HCH-Chr10:1652740 HCH10g0582 HCH-Chr10:4660903 4.90E-232 dispersed
HCH10g0205 HCH-Chr10:1652740 HCH3g0834 HCH-Chr3:6324251 3.70E-163 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32419 PF02309 AUX_IAA 5.10E-07 CL0072 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0205 - - - 0.0