Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g0210 | ATGAGTCTTTTCAAAGACTCTCCGTACAGACGTCGGAACGACGTCGAAGCTGCTAGTAGCAATTCCGGCGACCCTGACGATGAGGATTCTTCTTCCAATCCTTTCTATATTTCCAGAACGAAGCATGCTTCTGTGGATAGGCTTCGCCGCTGGAGACAAGCTGCTCTAGTGCTAAATGCTTCTCGGCGATTTCGGTATACGTTAGACTTGAAAAGGGAAGAAGAGAAGAAAGAAGCTTTAAGAAAGATTAGAGCACATGCGCAAGCCATACGCGCTGCATATCTCTTTAAAGCGGCTGGGGATCGTCTAGTTGTTCCAGGAACTACCCCAGCAGCAATTCCGAATGGTGATTTTGCTGTTGGGCAAGAGCAACTTGCTGTGTTGGTAAAAGATCGTAACATTGAAGCTCTAGAACAATATGGGGGGGTTAAGGGTATAGCACATATGTTACAAACGAATTTGGAGAAGGGAATTAATGGAGACGATTCTGATTTATTGAGACGGAGAAATTCCTATGGTTCAAACACATATCCTCAGAAAGAAGGAAGGAGTTTTTGGAGGTTTCTCTGGGAAGCTTGGCAAGATCTTACATTAATCATATTGATGGTAGCTGCTGTTGCTTCTTTGGTGCTAGGCATAAAGACCGAGGGTATCAAGGAAGGCTGGTATGATGGTGGAAGCATTGCTTTTGCAGTCATTCTTGTCATTGTTGTAACAGCTATTAGTGATTACCGACAATCTCTTCAGTTTCAGAACTTAAATAAGGAGAAGAGAAACATACAAGTGGAGGTCATTAGAGGCGGGCGGCGAGTTGATGTTTCAATTTATGACATTGTTGTTGGTGATGTTATACCACTCAATATTGGCGATCAGGTCCCTGCCGATGGCATTTTAATTTCTGGACACTCATTTTCCATTGATGAATCGAGCATGACTGGAGAGAGCAAGATTGTTCATAAGAATGCAAAGGAACCTTTCCTGATGTCTGGATGCAAAATAGCCGACGGTAGCGGCACCATGCTGGTTACCAGTGTAGGGATTAATACCGAATGGGGATTGCTTATGGCAAGTATTTCAGAAGACAATGGTGAGGAAACTCCTTTGCAGGTGCGTTTAAATGGAGTGGCAACTTTAATTGGTATCGTTGGTCTTACCGTAGCTTTTGCTGTCTTAGTTGTCCTCATTGCAAGATATTTCACTGGCCACACCAAAAATCCAGATGGAAGTCCTCAGTTTATTGCAGGTCAGACAAAAGTTGGTCGTGCTTTTGATGGTACCATCAAAATTATAACCATTGCGGTTACCATTGTAGTGGTTGCTGTTCCTGAAGGGCTTCCACTGGCTGTTACCTTAACTCTTGCCTACTCAATGAGAAAGATGATGGCAGACAAGGCATTGGTGCGGAGGCTCTCTGCTTGTGAGACAATGGGCTCTGCTACGACTATTTGCAGTGATAAGACTGGTACCTTAACTTTGAATCAGATGACAATTGTTGAGGCCTACGGTGGTGGGAAAAAGATTGATCCTCCAGAGAACAAGTCAGAGTTGTCTTCCATGTTATACTCCTTACTTATTGAAGGCATTGCATTGAACACAAATGGAAGTGTTTTTGTTCCTGAGGGTGGTGGAGATGCTGAGGTTACTGGATCACCTACAGAAAAGGCTATTCTTAATTGGGGGATTAAGCTGGGTATGAACTTCGAAGCTGTTAGATCAGAATCTCCTATCATTCATGTCTTCCCCTTCAGCTCAGAGAAGAAACGTGGTGGTGTTGCAGGTCAACGGCCTGATTCTGAAGTCCATATACATTGGAAAGGTGCTGCTGAAATAGTTTTAGCATCATGCACTCAGTATATCGATGAACACGATCACTTGGTCAACATGGATGAAGATAAGATTAAGTATTTCAAGAAAGCTATTGAGGATATGGCTGCTCGTAGTTTGCGTTGTGTTGCAATTGCCTATAGGTCTTATGAAAGTGAAAATGTTCCATCTGATGAAGAACAATTAAGTAAGTGGGCTCTACCAGAAGACGACCTTGTTTTGTTGGCTATTGTTGGTTTAAAGGACCCCTGTCGACCCGGAGTAAAAGATGCAGTACGGCTTTGCCAAAATGCTGGTGTTAAGGTGCGCATGGTCACTGGTGATAATGTTCAAACTGCTAGAGCTATTGCTTTGGAATGTGGAATACTTGGTTCGGATGCAGATGCTACTGAACCCAATCTTATCGAAGGGAGAGCATTCCGTGTCCTATCTGATGCAGAAAGAGAAGATATTGCTGAAAAAATATCAGTGATGGGTCGTTCCTCTCCAAATGATAAGCTTCTCCTTGTGCAAGCATTGAGAAAGAGGGGACATGTAGTTGCTGTAACTGGAGATGGTACTAATGATGCTCCTGCATTACATGAGGCGGATATTGGTCTTGCTATGGGTATTCAAGGGACAGAAGTTGCCAAGGAAAGCTCTGATATTATTATCTTAGACGACAATTTTGCTTCTGTTGTGAAGGTTGTAAGGTGGGGCCGATCAGTATATGCAAATATTCAGAAATTCATCCAGTTCCAGCTCACAGTCAATGTTGCTGCACTCATAATAAATGTTGTGGCTGCAATATCTTCTGGTGATGTGCCGCTAAACGCAGTGCAGCTTCTGTGGGTTAATCTTATTATGGACACTCTTGGAGCATTAGCATTGGCTACTGAACCGCCAACTAATCACCTAATGCAGAGGCCACCAGTTGGTAGAAGAGAACCTCTTATTACAAATATCATGTGGAGGAATTTGCTCATACAGGCATTTTATCAAGTCTCTGTCTTGCTTGTTCTCAATTTTCGTGGTAGAAGTTTGCTAAAGTTGAACCACTCAAATATAGAAGCCAATAAAGTGAAGAATACATTGATATTCAATGCATTTGTGCTTTGCCAAGTTTTCAACGAATTTAATGCTCGAAAACCTGATGAAAAGAATATATTCAAAGGAGTCACGAAAAATTATCTTTTTATTGGGATAGTTGGAATCACTGTTGTTCTTCAGGTGGTTATCATCGAGTTTCTTGGCAAATTCACTTCTACAGTCAAGCTTAATTGGCAGCATTGGCTTATTTCCATAATCATTGCCTTTATTGGTTGGCCCCTAGCTCTGCTCGGGAAGTTCATACCTGTTCCTGAAACTCCCTTCCACGAGTACTTTTCCAGACTGTTATGCAGAGGAAGACAATCTCAACATGGGGGGTCTTAA | 3237 | 42.51 | MSLFKDSPYRRRNDVEAASSNSGDPDDEDSSSNPFYISRTKHASVDRLRRWRQAALVLNASRRFRYTLDLKREEEKKEALRKIRAHAQAIRAAYLFKAAGDRLVVPGTTPAAIPNGDFAVGQEQLAVLVKDRNIEALEQYGGVKGIAHMLQTNLEKGINGDDSDLLRRRNSYGSNTYPQKEGRSFWRFLWEAWQDLTLIILMVAAVASLVLGIKTEGIKEGWYDGGSIAFAVILVIVVTAISDYRQSLQFQNLNKEKRNIQVEVIRGGRRVDVSIYDIVVGDVIPLNIGDQVPADGILISGHSFSIDESSMTGESKIVHKNAKEPFLMSGCKIADGSGTMLVTSVGINTEWGLLMASISEDNGEETPLQVRLNGVATLIGIVGLTVAFAVLVVLIARYFTGHTKNPDGSPQFIAGQTKVGRAFDGTIKIITIAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTIVEAYGGGKKIDPPENKSELSSMLYSLLIEGIALNTNGSVFVPEGGGDAEVTGSPTEKAILNWGIKLGMNFEAVRSESPIIHVFPFSSEKKRGGVAGQRPDSEVHIHWKGAAEIVLASCTQYIDEHDHLVNMDEDKIKYFKKAIEDMAARSLRCVAIAYRSYESENVPSDEEQLSKWALPEDDLVLLAIVGLKDPCRPGVKDAVRLCQNAGVKVRMVTGDNVQTARAIALECGILGSDADATEPNLIEGRAFRVLSDAEREDIAEKISVMGRSSPNDKLLLVQALRKRGHVVAVTGDGTNDAPALHEADIGLAMGIQGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALIINVVAAISSGDVPLNAVQLLWVNLIMDTLGALALATEPPTNHLMQRPPVGRREPLITNIMWRNLLIQAFYQVSVLLVLNFRGRSLLKLNHSNIEANKVKNTLIFNAFVLCQVFNEFNARKPDEKNIFKGVTKNYLFIGIVGITVVLQVVIIEFLGKFTSTVKLNWQHWLISIIIAFIGWPLALLGKFIPVPETPFHEYFSRLLCRGRQSQHGGS | 1078 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 1702521 | 1714865 | - | evm.model.ptg000016l.950 | HCH10g0210 | 552283 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g0210 | 1078 | Gene3D | - | 191 | 1041 | - | - | |
| HCH10g0210 | 1078 | FunFam | Calcium-transporting ATPase | 808 | 1056 | - | - | |
| HCH10g0210 | 1078 | Gene3D | - | 43 | 98 | - | - | |
| HCH10g0210 | 1078 | FunFam | Calcium-transporting ATPase | 191 | 248 | - | - | |
| HCH10g0210 | 1078 | Pfam | Cation transporting ATPase, C-terminus | 876 | 1052 | IPR006068 | - | |
| HCH10g0210 | 1078 | PRINTS | Sodium/potassium-transporting ATPase signature | 602 | 620 | - | - | |
| HCH10g0210 | 1078 | PRINTS | Sodium/potassium-transporting ATPase signature | 226 | 246 | - | - | |
| HCH10g0210 | 1078 | PRINTS | Sodium/potassium-transporting ATPase signature | 476 | 497 | - | - | |
| HCH10g0210 | 1078 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 485 | 491 | IPR018303 | - | |
| HCH10g0210 | 1078 | FunFam | Calcium-transporting ATPase | 43 | 99 | - | - | |
| HCH10g0210 | 1078 | NCBIfam | HAD-IC family P-type ATPase | 423 | 506 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g0210 | 1078 | NCBIfam | HAD-IC family P-type ATPase | 758 | 871 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| HCH10g0210 | 1078 | Coils | Coil | 70 | 90 | - | - | |
| HCH10g0210 | 1078 | FunFam | Calcium-transporting ATPase | 493 | 691 | - | - | |
| HCH10g0210 | 1078 | Gene3D | - | 165 | 359 | - | - | |
| HCH10g0210 | 1078 | SFLD | p-type atpase | 465 | 843 | IPR044492 | - | |
| HCH10g0210 | 1078 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 140 | 1054 | IPR023298 | - | |
| HCH10g0210 | 1078 | SUPERFAMILY | Calcium ATPase, transduction domain A | 260 | 356 | IPR008250 | - | |
| HCH10g0210 | 1078 | Pfam | Cation transporter/ATPase, N-terminus | 140 | 208 | IPR004014 | - | |
| HCH10g0210 | 1078 | Pfam | E1-E2 ATPase | 260 | 461 | - | - | |
| HCH10g0210 | 1078 | MobiDBLite | consensus disorder prediction | 14 | 35 | - | - | |
| HCH10g0210 | 1078 | SFLD | Haloacid Dehalogenase | 465 | 843 | - | - | |
| HCH10g0210 | 1078 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 133 | 1054 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| HCH10g0210 | 1078 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 490 | 688 | IPR023299 | GO:0000166(InterPro) | |
| HCH10g0210 | 1078 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 337 | 507 | - | - | |
| HCH10g0210 | 1078 | MobiDBLite | consensus disorder prediction | 1 | 35 | - | - | |
| HCH10g0210 | 1078 | Pfam | haloacid dehalogenase-like hydrolase | 481 | 805 | - | - | |
| HCH10g0210 | 1078 | Gene3D | - | 493 | 691 | IPR023299 | GO:0000166(InterPro) | |
| HCH10g0210 | 1078 | SMART | Cation_ATPase_N_a_2 | 139 | 213 | IPR004014 | - | |
| HCH10g0210 | 1078 | Gene3D | - | 480 | 836 | IPR023214 | - | |
| HCH10g0210 | 1078 | SUPERFAMILY | HAD-like | 481 | 896 | IPR036412 | - | |
| HCH10g0210 | 1078 | PANTHER | CATION TRANSPORTING ATPASE | 92 | 1054 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| HCH10g0210 | 1078 | FunFam | Calcium-transporting ATPase | 238 | 359 | - | - | |
| HCH10g0210 | 1078 | CDD | P-type_ATPase_Ca_PMCA-like | 165 | 924 | - | - | |
| HCH10g0210 | 1078 | PRINTS | P-type cation-transporting ATPase superfamily signature | 307 | 321 | - | - | |
| HCH10g0210 | 1078 | PRINTS | P-type cation-transporting ATPase superfamily signature | 684 | 695 | - | - | |
| HCH10g0210 | 1078 | PRINTS | P-type cation-transporting ATPase superfamily signature | 483 | 497 | - | - | |
| HCH10g0210 | 1078 | PRINTS | P-type cation-transporting ATPase superfamily signature | 706 | 716 | - | - | |
| HCH10g0210 | 1078 | PRINTS | P-type cation-transporting ATPase superfamily signature | 791 | 810 | - | - | |
| HCH10g0210 | 1078 | PRINTS | P-type cation-transporting ATPase superfamily signature | 815 | 827 | - | - | |
| HCH10g0210 | 1078 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 33 | 75 | IPR024750 | GO:0005516(InterPro) | |
| HCH10g0210 | 1078 | FunFam | Calcium-transporting ATPase | 685 | 836 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0210 | HCH-Chr10:1702521 | HCH4g1571 | HCH-Chr4:12260811 | 0.00E+00 | dispersed | |
| HCH10g0210 | HCH-Chr10:1702521 | HCH7g1264 | HCH-Chr7:45540596 | 3.60E-304 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g0210 | K01537 | - | csv:101211703 | 1843.17 |