Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0215 ATGGACAACATTTTGGATGAATATAAACATTATTGGGAGACCAACATGTTTCTCCAGAATGAAGAATTCGACAGCTGGGGATTGGATGAAGCATTTTATGGATCATACGACTCGAGCTCACCGGACGGGATGTGTTCGGCGTTGGAGGCGTCGAAGAACATCTTATCGGAGAGAAATCGAAGGAAGAAACTCAACGATAGACTTCTAGCTCTTCGAGCCGTGGTCCCAAATATCACCAAGATGGACAAGGCATCAATAATCAAAGATGCCATAGAGTATATTCAAGAGCTGCGGGAGCAAGAAAAAAATATTCAAACAGAGATCTCGGATCTTGAATCTGGCAATTTTATTCATCAAAATCCAGCTTTTGACTTCAATCATCAATCTCTTCATTCCAACAAAAGAAATAACAGACACTTATCTTCTGATTCCATTTCATCTTTCCCCATCGAAATTCTCGATCTTAGTGTGAAGTACATGGGAGAGAAGACGGTGGTGGTGAGCTTGGCGTGCAGTAGAAGAGCGGACACAATATTGAAGCTATGCAAAGTGATTGAATCTCTTAAGCTCAATATAATTACGGCCAACATTACCGTCGTCGCCGGCCGCCTTCTCGAGACTCTCTTCATCGAGGCAGATCAAGCAGAGGAAGATGCATTAAAGATGAAGATAAAAACAGCAATTGCAGCCATTAGCAGTGGTCCACAAAGTCCTATGAGCATTTGA 726 42.29 MDNILDEYKHYWETNMFLQNEEFDSWGLDEAFYGSYDSSSPDGMCSALEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELREQEKNIQTEISDLESGNFIHQNPAFDFNHQSLHSNKRNNRHLSSDSISSFPIEILDLSVKYMGEKTVVVSLACSRRADTILKLCKVIESLKLNIITANITVVAGRLLETLFIEADQAEEDALKMKIKTAIAAISSGPQSPMSI 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1782692 1786075 - evm.model.ptg000016l.945 HCH10g0215 552288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0215 241 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 49 222 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
HCH10g0215 241 Pfam Helix-loop-helix DNA-binding domain 54 98 IPR011598 GO:0046983(InterPro)
HCH10g0215 241 Gene3D - 47 115 IPR036638 GO:0046983(InterPro)
HCH10g0215 241 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 46 115 - -
HCH10g0215 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 116 IPR036638 GO:0046983(InterPro)
HCH10g0215 241 SMART finulus 54 103 IPR011598 GO:0046983(InterPro)
HCH10g0215 241 Coils Coil 87 114 - -
HCH10g0215 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0215 HCH-Chr10:1782692 HCH8g0365 HCH-Chr8:32998465 1.10E-75 dispersed
HCH10g0215 HCH-Chr10:1782692 HCH10g0216 HCH-Chr10:1790197 1.30E-68 tandem
HCH2g1214 HCH-Chr2:54572359 HCH10g0215 HCH-Chr10:1782692 1.10E-19 transposed
HCH10g0215 HCH-Chr10:1782692 HCH8g1061 HCH-Chr8:46542047 5.90E-74 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32420 PF00010 HLH 7.20E-11 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0215 - - - 0.0