Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0215 | ATGGACAACATTTTGGATGAATATAAACATTATTGGGAGACCAACATGTTTCTCCAGAATGAAGAATTCGACAGCTGGGGATTGGATGAAGCATTTTATGGATCATACGACTCGAGCTCACCGGACGGGATGTGTTCGGCGTTGGAGGCGTCGAAGAACATCTTATCGGAGAGAAATCGAAGGAAGAAACTCAACGATAGACTTCTAGCTCTTCGAGCCGTGGTCCCAAATATCACCAAGATGGACAAGGCATCAATAATCAAAGATGCCATAGAGTATATTCAAGAGCTGCGGGAGCAAGAAAAAAATATTCAAACAGAGATCTCGGATCTTGAATCTGGCAATTTTATTCATCAAAATCCAGCTTTTGACTTCAATCATCAATCTCTTCATTCCAACAAAAGAAATAACAGACACTTATCTTCTGATTCCATTTCATCTTTCCCCATCGAAATTCTCGATCTTAGTGTGAAGTACATGGGAGAGAAGACGGTGGTGGTGAGCTTGGCGTGCAGTAGAAGAGCGGACACAATATTGAAGCTATGCAAAGTGATTGAATCTCTTAAGCTCAATATAATTACGGCCAACATTACCGTCGTCGCCGGCCGCCTTCTCGAGACTCTCTTCATCGAGGCAGATCAAGCAGAGGAAGATGCATTAAAGATGAAGATAAAAACAGCAATTGCAGCCATTAGCAGTGGTCCACAAAGTCCTATGAGCATTTGA | 726 | 42.29 | MDNILDEYKHYWETNMFLQNEEFDSWGLDEAFYGSYDSSSPDGMCSALEASKNILSERNRRKKLNDRLLALRAVVPNITKMDKASIIKDAIEYIQELREQEKNIQTEISDLESGNFIHQNPAFDFNHQSLHSNKRNNRHLSSDSISSFPIEILDLSVKYMGEKTVVVSLACSRRADTILKLCKVIESLKLNIITANITVVAGRLLETLFIEADQAEEDALKMKIKTAIAAISSGPQSPMSI | 241 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 1782692 | 1786075 | - | evm.model.ptg000016l.945 | HCH10g0215 | 552288 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0215 | 241 | PANTHER | TRANSCRIPTION FACTOR SCREAM2-RELATED | 49 | 222 | IPR051358 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER) | |
HCH10g0215 | 241 | Pfam | Helix-loop-helix DNA-binding domain | 54 | 98 | IPR011598 | GO:0046983(InterPro) | |
HCH10g0215 | 241 | Gene3D | - | 47 | 115 | IPR036638 | GO:0046983(InterPro) | |
HCH10g0215 | 241 | FunFam | Basic helix-loop-helix (BHLH) DNA-binding superfamily protein | 46 | 115 | - | - | |
HCH10g0215 | 241 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 53 | 116 | IPR036638 | GO:0046983(InterPro) | |
HCH10g0215 | 241 | SMART | finulus | 54 | 103 | IPR011598 | GO:0046983(InterPro) | |
HCH10g0215 | 241 | Coils | Coil | 87 | 114 | - | - | |
HCH10g0215 | 241 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 48 | 97 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0215 | HCH-Chr10:1782692 | HCH8g0365 | HCH-Chr8:32998465 | 1.10E-75 | dispersed | |
HCH10g0215 | HCH-Chr10:1782692 | HCH10g0216 | HCH-Chr10:1790197 | 1.30E-68 | tandem | |
HCH2g1214 | HCH-Chr2:54572359 | HCH10g0215 | HCH-Chr10:1782692 | 1.10E-19 | transposed | |
HCH10g0215 | HCH-Chr10:1782692 | HCH8g1061 | HCH-Chr8:46542047 | 5.90E-74 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
32420 | PF00010 | HLH | 7.20E-11 | No_clan | HCH | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0215 | - | - | - | 0.0 |