Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0230 ATGGCTGAGGAAGCAATGGAGAAGAAGAAAGAGAGCAAAGACAAGAAATTGCAGAGAAGTCACTTTGATGTGTTGGGTTTGTGTTGTTCCTCAGAAGTTCCTTTGATTGAAAACATCCTCAAACCCCTCCAAGGAATCAAAGAGATCACTGTCATTGTCCCTACAAGAACTCTCATTGTTGTCCATGATTCTCTCCTCATTTCTCAGTTTCAAATTGTTAAGGCGCTAAATGAAGCAAGATTGGAGGCAAATGTAAAATTATATGGGAAAGGAATTTACAAAAAGAAATGGCCAAGTTCATGGGCAATTGCAAGTGGAATTCTCTTAACGGCGTCGTTTTTTAAGTATGTTTACCATCCTTTGCAATGGCTGGCTGTCGGAGCCGTCGCCGTTGGCATCTCTCCCATTCTTCTCAAAGCCATCGCCGCCATTCGCAACTTCAGAATTGATGTCAATATTCTTGCTATTATTTCTGTTACAGGGACAATTGCTATGAATGACTATATGGAAGCTGGCAGTATTGTCTTTCTATTTTCCATTGCTGAATGGCTTGAATCCAGAGCAAGCCACAAGGCTAATGCTGCAATGTCTTCATTAATGAGCTTAGCCCCTCAGAAAGCAGTCATAGCAGAAACTGGAGAGATGGTGGATGCAAATGAGGTGAAGTTGAAAACTGTTTTAGCTGTAAAGGCAGGAGAAGTTATACCAATTGATGGGATTGTTGTTGAAGGAAACAGTGAAGTAGATGAGAGAACTTTAACTGGTGAAACTTTCCCAGTTGCCAAACAGAAAGATTCTCTTGTATGGGCTGGCACCATCAACTTAAATGGTTATATCAGTATTCAAACTACTGTTGAAGCTGAGGATTGTGTGGTGGCTAAGATGGCTAAACTTGTAGAAGAGGCTCAAAATAACAAATCCAAAACTCAGAGATTTATTGACAGATGTGCTAAATATTACACCCCAGCTGTTCTTGTCATATCGGCTTGTTTTGCAGCGATTCCAGCTGCATTGAGAGCTGATAATCTCAAACATTGGTTTCATTTAGCTTTGGTTGTTCTAGTGAGTGCATGCCCCTGTGCTCTAATATTGTCCACTCCAGTAGCCACGTTTTGTGCTCTTACAAAGGCAGCATTGTCTGGTCTTTTGATCAAAGGAGGTGACCATCTTGAAGTTCTTGCTAAGATTAAGGTCATGGCCTTTGACAAAACTGGAACAATTACACGAGGTGAATTCGTCGTCATGGATTTTCGAGTTCTTCGAGATGATATTAGCTTAGACACATTGCTTTCTTGGGTTTCAAGCATTGAAAGCAAATCAAGTCATCCAATGGCAGCTGCACTTGTCAGCTATGGAAAGTTGCATTCTATTGATATAAAACCAGAAAATGTGGAGGAATTTGATAATTTTCCAGGAGAAGGCATTCATGGGAAAATAGATGGGAATCATATCTACATTGGAAGCAGAAAAATTGCTGCAAGGGCTGGCTGCTTAACAGCTCCAAACATAGACAATGAAACTAAACAAGGTTGGACCATCGGATATATCTTTCGTGGAGCAACTCTTACCGGAACTTTCAGCTTGTCTGATACCTGTCGTTCAGGAGTTAAAGAGGCGATCGACGAGCTCAAGAGTTTTGGTATAAAAACAGCTATGCTTACTGGAGATTGTCATGCAGCAGCCATGTATGCCCAACAACAGCTAGGGAATGCTCTTGACATAGTCCATTCAGAACTTCTACCGGCGGAAAAGGCAAATATCATAAAAGCATTCAAAAAGGATGGAGCAACTGCCATGATTGGAGATGGTTTAAATGACACACCTGCATTAGCTACTGCTGATATTGGTATATCAATGGGTGTTTCTGGTTCAGCTCTTGCCACAGAAACTGGGAATGTGATTCTAATGTCCAATGACATGAGGAAAATTCCAAAAGCCATAAAACTAGCAAAACAATCTCAAGTGAAAGTAATTGAAAATGTCATTCTTTCAATAGGGACTAAGGCAGCTATTCTTGGCTTGGCATTTGCTGGACATCCTCTTGTCTGGGCTGCAGTTCTTGCTGATGTAGGCACCTGCCTACTTGTCATCTTAAACAGCATGCTCCTTTTGAGAGGAACAGAAAAACACAGGAAGAAATGCTGCAAGAAATTTTCTAAACCTTGTCGGAATAAACACGAATCCATCGTCGGGAATGGCCAATTGTCTCATGATCATGATCATGATCATGATCATCATGATCATAAGCATTGCTGTTCTGAGGAAAAAGCTCACAAGACTCACCATTCTCCTAACAATGCCTTGAAAAGTACTCAGTCCATGGAACCTTCGCATTCTGATTCATGTAGGAAAAACTGTTGCTCAGATTCTAAAAGCCATGTTCAATGTAGCAACCATGAAGATAGTGGAGTTCACCAAGAAGCCAGCTTTGACTATGAATGTGAAAAAACTCAGTGCCATTCTCCCTCAGAACATTGCCATACAAGATTGTGCAAAGAATCAGAAAGATGTAACGGACAGCAGAAACTGGAACTTCATCACAGCCACTCAAGTCATTGTGAGAGAACCATGGTTGAGAAAGAAATAAATGGTAATTCACATGATGTTGCTATTGACATCCATGAGAGTATTGATTGTGAGAGAAATGGAGCATAA 2655 40.83 MAEEAMEKKKESKDKKLQRSHFDVLGLCCSSEVPLIENILKPLQGIKEITVIVPTRTLIVVHDSLLISQFQIVKALNEARLEANVKLYGKGIYKKKWPSSWAIASGILLTASFFKYVYHPLQWLAVGAVAVGISPILLKAIAAIRNFRIDVNILAIISVTGTIAMNDYMEAGSIVFLFSIAEWLESRASHKANAAMSSLMSLAPQKAVIAETGEMVDANEVKLKTVLAVKAGEVIPIDGIVVEGNSEVDERTLTGETFPVAKQKDSLVWAGTINLNGYISIQTTVEAEDCVVAKMAKLVEEAQNNKSKTQRFIDRCAKYYTPAVLVISACFAAIPAALRADNLKHWFHLALVVLVSACPCALILSTPVATFCALTKAALSGLLIKGGDHLEVLAKIKVMAFDKTGTITRGEFVVMDFRVLRDDISLDTLLSWVSSIESKSSHPMAAALVSYGKLHSIDIKPENVEEFDNFPGEGIHGKIDGNHIYIGSRKIAARAGCLTAPNIDNETKQGWTIGYIFRGATLTGTFSLSDTCRSGVKEAIDELKSFGIKTAMLTGDCHAAAMYAQQQLGNALDIVHSELLPAEKANIIKAFKKDGATAMIGDGLNDTPALATADIGISMGVSGSALATETGNVILMSNDMRKIPKAIKLAKQSQVKVIENVILSIGTKAAILGLAFAGHPLVWAAVLADVGTCLLVILNSMLLLRGTEKHRKKCCKKFSKPCRNKHESIVGNGQLSHDHDHDHDHHDHKHCCSEEKAHKTHHSPNNALKSTQSMEPSHSDSCRKNCCSDSKSHVQCSNHEDSGVHQEASFDYECEKTQCHSPSEHCHTRLCKESERCNGQQKLELHHSHSSHCERTMVEKEINGNSHDVAIDIHESIDCERNGA 884
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 1926466 1931770 - evm.model.ptg000016l.930 HCH10g0230 552303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0230 884 Gene3D - 188 303 - -
HCH10g0230 884 NCBIfam cadmium family heavy metal-translocating P-type ATPase 151 705 - -
HCH10g0230 884 SFLD p-type atpase 383 652 IPR044492 -
HCH10g0230 884 FunFam Putative cadmium/zinc-transporting ATPase 3 411 532 - -
HCH10g0230 884 ProSiteProfiles Heavy-metal-associated domain profile. 18 84 IPR006121 GO:0046872(InterPro)
HCH10g0230 884 SFLD Haloacid Dehalogenase 383 652 - -
HCH10g0230 884 MobiDBLite consensus disorder prediction 754 776 - -
HCH10g0230 884 FunFam Putative cadmium/zinc-transporting ATPase 3 14 87 - -
HCH10g0230 884 Gene3D - 13 87 - -
HCH10g0230 884 ProSitePatterns Hypothetical cof family signature 2. 600 622 - -
HCH10g0230 884 Pfam haloacid dehalogenase-like hydrolase 396 614 - -
HCH10g0230 884 ProSitePatterns E1-E2 ATPases phosphorylation site. 402 408 IPR018303 -
HCH10g0230 884 NCBIfam HAD-IC family P-type ATPase 174 677 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
HCH10g0230 884 SUPERFAMILY Calcium ATPase, transduction domain A 214 299 IPR008250 -
HCH10g0230 884 FunFam Copper-transporting ATPase 1, putative 189 303 - -
HCH10g0230 884 SUPERFAMILY HMA, heavy metal-associated domain 16 84 IPR036163 GO:0046872(InterPro)
HCH10g0230 884 PRINTS P-type cation-transporting ATPase superfamily signature 249 263 - -
HCH10g0230 884 PRINTS P-type cation-transporting ATPase superfamily signature 546 556 - -
HCH10g0230 884 PRINTS P-type cation-transporting ATPase superfamily signature 400 414 - -
HCH10g0230 884 PRINTS P-type cation-transporting ATPase superfamily signature 624 636 - -
HCH10g0230 884 PRINTS P-type cation-transporting ATPase superfamily signature 600 619 - -
HCH10g0230 884 PANTHER CADMIUM/ZINC-TRANSPORTING ATPASE HMA2-RELATED 8 838 IPR051014 GO:0016020(PANTHER)|GO:0022857(PANTHER)|GO:0055085(PANTHER)
HCH10g0230 884 Gene3D - 392 651 IPR023214 -
HCH10g0230 884 NCBIfam heavy metal translocating P-type ATPase 151 703 IPR027256 GO:0006812(InterPro)|GO:0016020(InterPro)|GO:0019829(InterPro)
HCH10g0230 884 CDD P-type_ATPase_HM 101 702 - -
HCH10g0230 884 Pfam E1-E2 ATPase 210 378 - -
HCH10g0230 884 SUPERFAMILY Calcium ATPase, transmembrane domain M 159 486 IPR023298 -
HCH10g0230 884 SUPERFAMILY HAD-like 399 701 IPR036412 -
HCH10g0230 884 Gene3D - 411 532 IPR023299 GO:0000166(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0230 HCH-Chr10:1926466 HCH14g1171 HCH-Chr14:38516124 8.60E-70 dispersed
HCH10g0230 HCH-Chr10:1926466 HCH8g1049 HCH-Chr8:46443646 1.20E-292 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0230 K01534 - csv:101203668 1191.02