Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0258 ATGGATTCCGAACACGACAACCAGAAATTCATTTTCCGTTCAAAGCTCCCCGACATTTACATCCCAAACCACCTCCCCCTTCACACCTACTGCTTCGAGAACATCTCTCAATTCCAAGACCGTCCTTGCTTGATCAACGCCGTCACCGGCGACATCAATACCTACTCCGACGTCGAGCTCACATCACGGCGGGTCGCCGCCGGACTTAACAAACTCGGCGTTGGACAAGGCGATGTTATTATGCTCTTGCTTCAAAACAGCCCGCAGTTCGTTTTCTCTTTCCTCGGCGCCTCGTACGGCGGCGCTATAAGCACCACTGCTAACCCGTTTTATACGATGACGGAGATCGTGAAGCAAGCTAAAGATGCGAATCCGAAAATGATAATTACTCAAGCGGTTTTTGTGGAGAAAGTTAAGGGTTTTGCTGAGGAAAATGGGGTTGAAGTTTTGTGTATTGATTCGCCGCCGGATGGTTGTTTGAGTTTTTCCGAGCTGACTGAGGCGGATGAAAGTGAGATTCCGGCGGTGAAGATTAACTCCGGTGATGTCGTGGCGCTTCCGTATTCGTCGGGAACTACCGGACTTCCTAAGGGAGTGATGCTGACGCATAAATCTTTAGTCACTAGCGTGGCTCAGCAGGTGGATGGAGAAAACCCAAATCTATACTACAAAAGCAACGATGTGATATTGTGTGTTCTTCCATTATTCCACATTTACTCATTGAATTCGATTCTTCTATGCGGACTTCGGGTCGGGGCAGCGATTTTAATAATGCAGAAATACGAAATCAATTCTCTCATGGAGTTTGTTCAGAAATATAAGGTGACGATAGCCCCCTTCGTTCCTCCTATCGTTTTGGATATTGCAAAGAGTCCTGAAATCCATAAATACGACTTGTCGTCTATAAGAACCGTCATGTCGGGAGCCGCTCCCATGGGGAAAGAACTTGAAGATACTGTCAAGGCAATGCTTCCAAATGCTATTCTTGGACAGGGGTATGGAATGACAGAGGCAGGACCAGTGCTATCGATGTGTCTGGCATTTGCGAAGGAAGGTTACGAGGTAAAATCAGGTGCATGCGGGACCGTAGTAAGAAATGCAGAGATGAAGATCATCAACTCAGAGACTGGCGCTTCTCTACCCAGAAACCAATCTGGAGAAATTTGCATTCGTGGAAGCCAGATCATGAAAGGATATCTAAATGACAACGAAGCAACCGAGAAGACGATAGACAAAGATGGATGGCTGCATACCGGAGATGTAGGGTTCATTGATGATGATGATGAGATCTTCATCGTTGATCGATTGAAGGAATTGATCAAATACAAAGGATTTCAAGTGGCCCCCGCCGAGCTTGAGGCTTTGTTGACTTCTAACCCTAATATCTTCTCTGCTGCGGTTATACCAATGAAAGATGAAGCTGTGGGAGAGATTCCTGTTGCATTTGTTGTGAGATCTAAAGGTTCCAAGATTAGTGAGGATGACATCAAACAATACATTTCAAACCAGGTGATATTTTACAAAAGAATAAGAAAGGTTTTCTTTGTGGAATCAATTCCCATTGCTCCTTCAGGGAAGATACTGAGGAAAGTTTTAAGAGCTGAGTTAGAGACTGGTAAATTCTGA 1626 45.2 MDSEHDNQKFIFRSKLPDIYIPNHLPLHTYCFENISQFQDRPCLINAVTGDINTYSDVELTSRRVAAGLNKLGVGQGDVIMLLLQNSPQFVFSFLGASYGGAISTTANPFYTMTEIVKQAKDANPKMIITQAVFVEKVKGFAEENGVEVLCIDSPPDGCLSFSELTEADESEIPAVKINSGDVVALPYSSGTTGLPKGVMLTHKSLVTSVAQQVDGENPNLYYKSNDVILCVLPLFHIYSLNSILLCGLRVGAAILIMQKYEINSLMEFVQKYKVTIAPFVPPIVLDIAKSPEIHKYDLSSIRTVMSGAAPMGKELEDTVKAMLPNAILGQGYGMTEAGPVLSMCLAFAKEGYEVKSGACGTVVRNAEMKIINSETGASLPRNQSGEICIRGSQIMKGYLNDNEATEKTIDKDGWLHTGDVGFIDDDDEIFIVDRLKELIKYKGFQVAPAELEALLTSNPNIFSAAVIPMKDEAVGEIPVAFVVRSKGSKISEDDIKQYISNQVIFYKRIRKVFFVESIPIAPSGKILRKVLRAELETGKF 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2150478 2154657 + evm.model.ptg000016l.902 HCH10g0258 552331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0258 541 FunFam 4-coumarate--CoA ligase 2 438 539 - -
HCH10g0258 541 SUPERFAMILY Acetyl-CoA synthetase-like 11 537 - -
HCH10g0258 541 Pfam AMP-binding enzyme 33 400 IPR000873 -
HCH10g0258 541 Gene3D - 437 539 IPR045851 -
HCH10g0258 541 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
HCH10g0258 541 CDD 4CL 21 532 - -
HCH10g0258 541 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
HCH10g0258 541 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
HCH10g0258 541 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 437 - -
HCH10g0258 541 Gene3D - 2 436 IPR042099 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0258 HCH-Chr10:2150478 HCH6g0312 HCH-Chr6:4851461 3.70E-225 dispersed
HCH4g1406 HCH-Chr4:10301846 HCH10g0258 HCH-Chr10:2150478 1.60E-31 transposed
HCH6g0597 HCH-Chr6:35717560 HCH10g0258 HCH-Chr10:2150478 1.90E-34 transposed
HCH10g0258 HCH-Chr10:2150478 HCH8g1024 HCH-Chr8:46243694 2.30E-222 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0258 K01904 - rcu:8270667 842.802