Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0265 ATGGATAGCCCTTCCACGACTGGTTCGAATACCTCTGCCCCTAATTTCTCACCTGGTTCGAACCCCGGTTCGAATGATGAGAACCCGCGTGTTAAATTCCTATGTAGTTTTTTGGGAAGTATAATGCCTCGCCCACAAGATGGTAAGCTTCGATATGTTGGGGGAGAGACCAGGATTGTGAGTGTGCCGAGGGATATTATGTATGAGGAGTTGATGAATAAGATGAAGGAACTTTATGAATGGGCAGCAGTCTTGAAGTACCAACAGCCAGATGAGGATCTTGATGCTCTTGTATCTGTTGTTAATGATGATGATGTGATTAATATGATGGAAGAGTATGATAAGCTGGGATCGGGTGATGGATTCACTAGGCTTAGAATATTTTTGTTTTCGCATCCCGAGCAAGATGGTTCTTTGCCCTTTATTGATGGGGATGAGAGGGATTCTGAGAGGAGATATGTAGATGCTCTTAATAATTCAAGTGACATTAATGATTTTGTTAGACAGCAGCAGCCGGATTCCCCAGCAATTAGTGCCATGGACGATATACATGGGACCGAACATTTTTTGAATCCAATGAGTATTGAGGGTAATCTTCACAGCCAGAGGAGTTGTGATCTCTTGCCACAATATCACCTGCATAACCTCACAATCCCTCATGTTGGATCTGGGCAGCAACAACACTCTGTAAGTCAAAGGTATAATGAAATGGAAGCTCCATGGAGTCCTGCTTACCTTTCTCCCAGGCATCACGGTCCTTATGATTCAAGACAGGTGGGAGAGTATCCATCTTCTCCCTCTGCACGTTACCGTATGCCATTCACAGATTTACCGGATAAATATTTGGAAAGAATGCCTGAAGAGTACTATAGGCAGCAAATGAATCACCAGCCTATGTATGAACACCAACCACAGTATAATGAGAATGTTGTCTGGCTACCGAATGGAGCAATTACTGGTGAGAAATCAGGTTTCCCAGGTAACTTATTACATGGACATGCTGTTCCAGATGGGAATAGTTCATGTGAACACTGCCGGGCAAATTTTCACCGATATCAAACACAGATGGAGCATACTAACATGCTAAATGGAATTCCCCAAGTTGTTAATCCATCAACTGATTACCCTCAGAATAGGGAGGTTTTCATGCAAAAGGCAGATGCAAAGTTTCATCACAGTGTTTTCACCAATGAGCAGAATATTAATGATCATCGACATGCTTATAATGAGACACCGCCACATGAGAGAGGATGGACTATGCAACATCAGTTGAATGTGCGGGTGGATGACATGAGATCACACATGTCTGGAGCTGGTAGGTTGAATGATCACTACATTGTAGAGGGTTCTGGCTCAAATTTTCTTACTGGACAAAGTAATGTAACCGATGGCTACCATGTATCAATGAATTTTCATCAGCGAGTTGGACAAGAATTGGGAGATGAGGCATTTCATGACCAAGTGGTGCCCGGTGGATCACATACTTGTATTCCTCCTCCTGAAGACCGTGGTATGGGCTATATGAATATGTCTTATGCTTATGGAGGAGATACTCAATATCCTCACATGACACATAGGCATGTGCATGGCAATACCTTGTGGAGAAATGTTCAGAATCCGTTACCTGCTGCTTCCCCTTACGAAGCATCTAATTCTCTTCAGCAAGGGAATGCAACTGTAAATCCAGGATATATCAGGGGCGTGCAAGAGGGTAGTCCACACATTAGAAGTCCACGCATTAGTATGGGTATGGACCATCAAAATCCTTGGCATGAATCCTCACAGAAAATGTTGGGTCTTGAGGGAGCAACTGACCTAGAGAATTTACCAGCACGTGCTTTGAAGATTAACCTGAACACAGTTGGCTATGACGATCAACACTTCCCAAGTGTAGAACATAGTCAACCACAGCTAGATAAGACAAATCTTGTCACTCCTCCTGACGCTATTCAGAGTTCAGATTCATCTACAGTATTCATTCACGATAAATTGGTTACTAATGTTCCTTCTAGCCAAAATCCACAACCAATGGCTGTTATGGTTGTTAATGGATCTACGAGTTTGGAAGGGAAAATTGGGCATGGAGAAGGAAACGAGAATACTGATTTGGTAAAAGTTGACATTTCGGATGCACTTGTTTCTCCTCCTGAGAAAAACAAAACTGATGATGAATATTCCAAGCTAATGCCTCCCGATTTGTTAAATTCTAATTCCATGAATACTCCAGTACAAAATGGTGATGGTATGAAATCAGTGGAAGAGACTCTTAGTGGTCCTGCTGAAGAGCCAAAACTCTCCATAAACCATCTGAGTTTCTTACCTGAGTTGATTGCGTCTGTGAAAAGAGTAGCACTAGAAGTATCTGAAGAGGCAATTATTGAGGAAACTGCTCTAGGGAAGCCTGATTCAGTAGGCAAACAAGAGACTGCAAATGAGTTAGAATCCTCGAATTCCCATGGGCAGCCTGAGTTGGAAAATGACAACGACCCTCTAAAAAGCTCCAGAATTGAGCCAACTAAGGCTGAGGAAGAAGCCATTTCAAGGGGATTACAAACTATAAAAAATGACGATCTGGAGGAGATACGTGAGCTAGGGTCTGGGACTTATGGCGCTGTTTATCATGGGAAATGGAAAGGTTCTGATGTTGCCATAAAGAGAATCAAAGCTAGCTGTTTTGCTGGGCGACCCTCAGAAAGGGAACGTTTGATTGCGGATTTTTGGAAGGAGGCTTTAATACTAAGTTCTTTGCACCATCCAAATGTTGTTTCCTTTTACGGTATTGTTCGTGATGGTCCTGATGGGTCCTTAGCAACGGTAACAGAGTTCATGATAAATGGATCATTGAAACAATTTTTGCACAAGAAGGACAGGACTATTGATCGTCGTAAGAGACTCATTTTAGCTATGGATGCTGCATTTGGGATGGAATATTTACATGGAAAAAACATTGTACATTTTGATTTGAAATGTGAAAATCTTTTAGTGAATATGAGAGACCCACAGAGGCCTGTTTGCAAGATTGGTGATTTGGGCTTGTCAAAGGTAAGACAACACACCTTAGTATCTGGAGGCGTTCGTGGAACTTTGCCCTGGATGGCACCAGAGCTTCTTAGTGGGAAAAGTAACATGGTGACTGAGAAGATTGATGTGTACTCATTTGGAATTGTTATGTGGGAAGTGCTCACTGGAGATGAACCTTATGCAGATATGCATTGTGCTTCTATAATTGGAGGGATTGTAAACAATTCTTTACGTCCACAAATTCCGACATGGTGCGACCCGGAATGGAAGGCTTTGATGTCAAGCTGTTGGGACTCAGACCCAGCTCAGAGGCCATCATTTTCAGAAATCTCTCAGAAGCTGAGGACTATGGCAGCTGCAATGAATGTGAAATAG 3396 42.55 MDSPSTTGSNTSAPNFSPGSNPGSNDENPRVKFLCSFLGSIMPRPQDGKLRYVGGETRIVSVPRDIMYEELMNKMKELYEWAAVLKYQQPDEDLDALVSVVNDDDVINMMEEYDKLGSGDGFTRLRIFLFSHPEQDGSLPFIDGDERDSERRYVDALNNSSDINDFVRQQQPDSPAISAMDDIHGTEHFLNPMSIEGNLHSQRSCDLLPQYHLHNLTIPHVGSGQQQHSVSQRYNEMEAPWSPAYLSPRHHGPYDSRQVGEYPSSPSARYRMPFTDLPDKYLERMPEEYYRQQMNHQPMYEHQPQYNENVVWLPNGAITGEKSGFPGNLLHGHAVPDGNSSCEHCRANFHRYQTQMEHTNMLNGIPQVVNPSTDYPQNREVFMQKADAKFHHSVFTNEQNINDHRHAYNETPPHERGWTMQHQLNVRVDDMRSHMSGAGRLNDHYIVEGSGSNFLTGQSNVTDGYHVSMNFHQRVGQELGDEAFHDQVVPGGSHTCIPPPEDRGMGYMNMSYAYGGDTQYPHMTHRHVHGNTLWRNVQNPLPAASPYEASNSLQQGNATVNPGYIRGVQEGSPHIRSPRISMGMDHQNPWHESSQKMLGLEGATDLENLPARALKINLNTVGYDDQHFPSVEHSQPQLDKTNLVTPPDAIQSSDSSTVFIHDKLVTNVPSSQNPQPMAVMVVNGSTSLEGKIGHGEGNENTDLVKVDISDALVSPPEKNKTDDEYSKLMPPDLLNSNSMNTPVQNGDGMKSVEETLSGPAEEPKLSINHLSFLPELIASVKRVALEVSEEAIIEETALGKPDSVGKQETANELESSNSHGQPELENDNDPLKSSRIEPTKAEEEAISRGLQTIKNDDLEEIRELGSGTYGAVYHGKWKGSDVAIKRIKASCFAGRPSERERLIADFWKEALILSSLHHPNVVSFYGIVRDGPDGSLATVTEFMINGSLKQFLHKKDRTIDRRKRLILAMDAAFGMEYLHGKNIVHFDLKCENLLVNMRDPQRPVCKIGDLGLSKVRQHTLVSGGVRGTLPWMAPELLSGKSNMVTEKIDVYSFGIVMWEVLTGDEPYADMHCASIIGGIVNNSLRPQIPTWCDPEWKALMSSCWDSDPAQRPSFSEISQKLRTMAAAMNVK 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2193555 2200268 + evm.model.ptg000016l.895 HCH10g0265 552338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0265 1131 Gene3D - 49 132 - -
HCH10g0265 1131 MobiDBLite consensus disorder prediction 808 824 - -
HCH10g0265 1131 ProSitePatterns Protein kinases ATP-binding region signature. 864 885 IPR017441 GO:0005524(InterPro)
HCH10g0265 1131 MobiDBLite consensus disorder prediction 798 847 - -
HCH10g0265 1131 MobiDBLite consensus disorder prediction 1 26 - -
HCH10g0265 1131 PANTHER SERINE-THREONINE PROTEIN KINASE 7 1125 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
HCH10g0265 1131 Gene3D Phosphorylase Kinase; domain 1 844 943 - -
HCH10g0265 1131 SUPERFAMILY Protein kinase-like (PK-like) 845 1119 IPR011009 -
HCH10g0265 1131 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 851 945 - -
HCH10g0265 1131 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 946 1131 - -
HCH10g0265 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 983 995 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0265 1131 MobiDBLite consensus disorder prediction 731 751 - -
HCH10g0265 1131 MobiDBLite consensus disorder prediction 825 847 - -
HCH10g0265 1131 SMART PB1_new 45 130 IPR000270 GO:0005515(InterPro)
HCH10g0265 1131 SUPERFAMILY CAD & PB1 domains 47 135 - -
HCH10g0265 1131 ProSiteProfiles Protein kinase domain profile. 858 1124 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0265 1131 PRINTS Tyrosine kinase catalytic domain signature 1048 1070 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0265 1131 PRINTS Tyrosine kinase catalytic domain signature 1092 1114 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0265 1131 PRINTS Tyrosine kinase catalytic domain signature 940 953 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0265 1131 PRINTS Tyrosine kinase catalytic domain signature 977 995 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0265 1131 Gene3D Transferase(Phosphotransferase) domain 1 944 1131 - -
HCH10g0265 1131 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 50 132 - -
HCH10g0265 1131 Pfam PB1 domain 46 130 IPR000270 GO:0005515(InterPro)
HCH10g0265 1131 SMART serkin_6 858 1125 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0265 1131 CDD STKc_MAP3K-like 864 1121 - -
HCH10g0265 1131 Pfam Protein tyrosine and serine/threonine kinase 860 1121 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0265 1131 MobiDBLite consensus disorder prediction 730 759 - -
HCH10g0265 1131 CDD PB1_UP2 34 130 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0265 HCH-Chr10:2193555 HCH8g0902 HCH-Chr8:45359442 2.40E-141 dispersed
HCH3g0367 HCH-Chr3:2340388 HCH10g0265 HCH-Chr10:2193555 5.50E-17 dispersed
HCH8g1422 HCH-Chr8:48853140 HCH10g0265 HCH-Chr10:2193555 3.90E-21 dispersed
HCH10g0265 HCH-Chr10:2193555 HCH3g0500 HCH-Chr3:3237128 6.70E-144 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80976 PF07714 PK_Tyr_Ser-Thr 5.70E-62 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0265 - - - 0.0