Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0303 ATGGCTGGTAATGGAGTTTTTGCAGAGATTTTTGATGGACAAGTTTACAAATACTATTCTGAAGGAGAATGGAAGAATTCTTCTTCAGGGCAAAGTGTTGCCATTATCAACCCCACTACTAGAAAGACTCAGTACAGGGTTCAAGCTTGCAGCCAAGAAGAGGTAAACAAAGTCATGGAAATTGCTAAAACTGCACAGAAATCATGGGCAAAGACTCCACTTTGGAAGCGAGCAGAGCTTCTTCACAAGGCAGCTGCAATTCTAAAAGACCATAAAGATCCAATTGCTGAGTGTTTGGTCAAAGAAATTGCAAAACCAGCTAAAGATGCAGTTACTGAGGTTGTGAGATCTGGAGACCTTATTTCATATTGTGCTGAAGAAGGTGTTAGGATTTTGGGAGAGGGAAAGTTCTTGGTTTCTGACAGTTTCCCAGGAAATGAAAGGACCAAATATTGCCTTACTTCCAAGATCCCACTTGGTGTGGTTTTAGCAATTCCACCATTTAACTATCCTGTCAACCTGGCTGTCTCAAAAATTGCCCCTGCTCTGATTGCTGGAAATTCCATTGTCCTCAAGCCTCCAACTCAGGGTGCTGTTTCTGCACTTCACATGGTTCATTGCTTCCACCTGGCCGGTTTCCCGAAAGGCCTAATCAGTTGTGTCACTGGAAAAGGCTCTGAAATTGGTGACTTCCTCACCATGCATCCTGGTGTGAATTGTATAAGCTTTACGGGTGGAGATACCGGTGTCGCAATTTCAAAGAAGGCAGGTATGATACCTCTTCAGATGGAATTGGGAGGCAAAGATGCCTGCATTGTGCTTGAGGATGCAGATCTTGATTTAGTTGCTGCAAACATTATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCTGTTAAGGTTGTATTGGTAATGGAATCCGTAGCAGATGCTTTAGTCGAGAAAGTAAAGGCCCGAGTGGCTAAACTAACCGTCGGTCCCCCCGAAGACGACTGTGACATTACTCCGGTTGTGACCGAGTCATCTGCAAATTTCATTGAAGGGTTGGTACTGGATGCAAAAGAGAAAGGAGCAACATTTTGCGAAGAGTACAGAAGAGAGGGCAACCTTATCTGGCCCTTATTGTTAGATCATGTTAGACCTGATATGAGGATTGCATGGGAGGAACCTTTTGGACCAGTTTTGCCAGTTATAAGGATCAATTCCATTGAAGAAGGAATCCACCATTGCAATGCCAGCAACTTTGGACTCCAGGGCTGTGTCTTCACAAAAGACATCAACAAAGCTATGTTGATAAGTGATGCAATGGAAACCGGAACAGTTCAAATCAACTCCGCACCAGCTCGAGGGCCTGATCATTTTCCTTTTCAGGGAATTAAAGACAGTGGAATTGGATCTCAAGGCATCACCAATAGCATCATGATGATGACCAAAGTGAAGACCACTGTCATCAATTTACCAACACCTTCCTACACCATGGGAACCAAGTTTATTAATAAACGAGCCCTTGGGCCCAAATTGTGA 1530 43.79 MAGNGVFAEIFDGQVYKYYSEGEWKNSSSGQSVAIINPTTRKTQYRVQACSQEEVNKVMEIAKTAQKSWAKTPLWKRAELLHKAAAILKDHKDPIAECLVKEIAKPAKDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGVAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVKARVAKLTVGPPEDDCDITPVVTESSANFIEGLVLDAKEKGATFCEEYRREGNLIWPLLLDHVRPDMRIAWEEPFGPVLPVIRINSIEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGITNSIMMMTKVKTTVINLPTPSYTMGTKFINKRALGPKL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2488783 2492579 + evm.model.ptg000016l.857 HCH10g0303 552376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0303 509 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491(InterPro)
HCH10g0303 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
HCH10g0303 509 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491(InterPro)
HCH10g0303 509 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491(InterPro)
HCH10g0303 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 281 - -
HCH10g0303 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491(InterPro)
HCH10g0303 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620(InterPro)
HCH10g0303 509 PANTHER ALDEHYDE DEHYDROGENASE 10 495 IPR051020 GO:0008911(PANTHER)
HCH10g0303 509 SUPERFAMILY ALDH-like 14 487 IPR016161 GO:0016491(InterPro)
HCH10g0303 509 CDD ALDH_F11_NP-GAPDH 15 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0303 HCH-Chr10:2488783 HCH6g1747 HCH-Chr6:49978929 2.90E-46 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0303 K00131 - csv:101208699 957.207