Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0304 ATGCCAGCTTCAATTGCTCTCTTCCTCCTTCCACCAATGGCGCCCTGTAACAGAGATTCGAAACTCACGAACTCCATTTCCGACCACCGTACGCGGCGGCCGGGGATTCACTCTTCTCCTACTTCTCAATTCCAACACCACCTTCAAAGCTCCCACTTTGACCCTTCCTTATCCTCCCTCCACGATGATTTCTTCGACCAAATTCTTTCAACTCTCGAAAACCCCATCCCCACTTCTTCTGACCTCGGCGACTTATCCGGGGAGACTCCGCCGATTCCGTCGTCTAGTTGCGAGAATGCTCCCCATCAGTTTGATGAGGCGGCGAAAGTAGCGATGATGATGCTTCAACACCAATTACTTATGGCTACTACCGGTGGTAACTCTGGCTTCCGTCAATTTCCTTTGGACGGTGCCGGCGCCGGCGTTGAAGGTTCTTCGTCTTTCCAATGCCCTAATCCGATAAACGACGGTTCGCTTCCATCTCTCTATAATGAATTTGCGGGTTCTCTCCATGGCTCCGGTCCGGCTCACAATCCAAACCAGTCGCAGCATTTTCATCATTCTCAAGGAAATTCGTCGCAAATACAGAATTTTGGAGTTCCAAATATAGTAAATAATCCTCCGCCGTCTAGTATTCCGGCGCAGCCTCGACAAAGAGTTAGGGCGCGTAGAGGTCAAGCCACAGATCCTCACAGTATTGCGGAAAGATTAAGAAGGGAGAGAATTGCAGAGCGAATGAAAGGTTTACAGGAACTTGTTCCCAATGCCAATAAGACAGACAAGGCTTCAATGCTGGATGAGATCATAGATTATTTAAAGTTCCTCCAGCTTCAAGTCAAAGTTCTGAGTATGAGCAGGCTGGGGGGTGCTGGAGCGGCTGTGCCTCCTCTTGTACCTGATATTTCCTCTCAGGGTGGTACCCGTGATGGTGGTGGTGATCGTGTTCAATCTAACAATGACCAAACGCTCTCAGGTTCTGATACCATGTTAGTCGCGGAAAACCAAGTGATTAAGCTCATGGAGGAGGACATGGGCTCTGCCATGCAGTATTTACAAGGCAAAGGTCTTTGCCTCATGCCCATTTCCCTCGCCTCCGCCATCTCCACCGCCACGTGCCGCTCTAGGATTCCCAGCCACCCTATCATCCCGTCAAATGGTGGCGGAGAAGGCCCCGCTTCTCCCAGCATGTCAGTGTTAACTGTTCAGTCAGCCACGGCTACTTTGGGTAACGGCGCCGTTGACAGAGGCTCCGCTTCCGTTTCAAAGCCGTGA 1272 50.86 MPASIALFLLPPMAPCNRDSKLTNSISDHRTRRPGIHSSPTSQFQHHLQSSHFDPSLSSLHDDFFDQILSTLENPIPTSSDLGDLSGETPPIPSSSCENAPHQFDEAAKVAMMMLQHQLLMATTGGNSGFRQFPLDGAGAGVEGSSSFQCPNPINDGSLPSLYNEFAGSLHGSGPAHNPNQSQHFHHSQGNSSQIQNFGVPNIVNNPPPSSIPAQPRQRVRARRGQATDPHSIAERLRRERIAERMKGLQELVPNANKTDKASMLDEIIDYLKFLQLQVKVLSMSRLGGAGAAVPPLVPDISSQGGTRDGGGDRVQSNNDQTLSGSDTMLVAENQVIKLMEEDMGSAMQYLQGKGLCLMPISLASAISTATCRSRIPSHPIIPSNGGGEGPASPSMSVLTVQSATATLGNGAVDRGSASVSKP 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2496185 2500029 + evm.model.ptg000016l.856 HCH10g0304 552377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0304 423 MobiDBLite consensus disorder prediction 76 100 - -
HCH10g0304 423 Gene3D - 221 283 IPR036638 GO:0046983(InterPro)
HCH10g0304 423 SMART finulus 232 281 IPR011598 GO:0046983(InterPro)
HCH10g0304 423 Pfam Helix-loop-helix DNA-binding domain 231 276 IPR011598 GO:0046983(InterPro)
HCH10g0304 423 MobiDBLite consensus disorder prediction 19 52 - -
HCH10g0304 423 MobiDBLite consensus disorder prediction 309 324 - -
HCH10g0304 423 MobiDBLite consensus disorder prediction 36 52 - -
HCH10g0304 423 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 285 IPR036638 GO:0046983(InterPro)
HCH10g0304 423 MobiDBLite consensus disorder prediction 174 205 - -
HCH10g0304 423 MobiDBLite consensus disorder prediction 298 324 - -
HCH10g0304 423 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 226 275 IPR011598 GO:0046983(InterPro)
HCH10g0304 423 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 46 365 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
HCH10g0304 423 MobiDBLite consensus disorder prediction 165 232 - -
HCH10g0304 423 FunFam Transcription factor bHLH66 223 288 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0304 HCH-Chr10:2496185 HCH8g0190 HCH-Chr8:7162775 6.60E-44 dispersed
HCH11g0587 HCH-Chr11:11294317 HCH10g0304 HCH-Chr10:2496185 5.40E-13 transposed
HCH12g1535 HCH-Chr12:41769894 HCH10g0304 HCH-Chr10:2496185 1.30E-12 transposed
HCH5g1248 HCH-Chr5:44456579 HCH10g0304 HCH-Chr10:2496185 6.80E-10 transposed
HCH10g0304 HCH-Chr10:2496185 HCH8g0922 HCH-Chr8:45517757 2.00E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32427 PF00010 HLH 2.70E-09 No_clan HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0304 - - - 0.0