Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0306 | ATGGCGGATAAAGGAAGAGATATCTTCGTCGGAGGCGGCGGCAGTCTTCTTGACGGAAAATACGAGCTTGGCCGTCTACTCGGTCACGGAACATTCGCGAAAGTCTACCACGCTCGTAACCTCCGTACAGGAAGAAGCGTAGCGATGAAAGTCGTCGGAAAAGAAAAGATAATAAAAGTAGGAATGACGGAGCAAATCAAGAGAGAAATCTCCGTAATGAAAATGATGAAGCATCCGAACATCGTCGAGCTTCACGAAGTAATGGCGAGCAAATCCAAAATCTATTTCGCGATGGAACTCGTAAGAGGCGGCGAGCTTTTCTCCAAAATCGCCAAAGGCCGATTACGAGAAGACGTAGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGCCGCGGCGTTTATCACCGTGACCTAAAACCAGAAAATCTCCTCCTCGACGAAAACGGAAACCTAAAAGTCACCGATTTTGGCCTCACGGCGTTATCGGAGAATTTAAAACAAGACGGATTATTGCACACCACGTGCGGCACTCCTGCTTACGTGGCACCGGAGGTTATCGGAAAGCAAGGATACGACGGAGCCAAGGCGGATTTATGGTCTTGTGGTGTGATATTGTTCGTTTTACTTGCTGGTTATCTTCCTTTTCAGGATGAGAATCTCGTCGCGATGTACCGGAAAATTTACCGAGGGGATTTCAAGTGTCCGGCGTGGTTTTCGCCGGAAGCTCGTAGATTGATCACCAAGCTTCTCGATCCAAATCCAGTCACGCGAATTGGGATCGAGAAGATAATGTCATCGTCGTGGTTTAAGAAATCAATATCGAGGGCGGGGACGGGGGCTGTGAAAGAGGAGGAGAAGGAAATTGAGGAGAAATCAGAGACATTGAATGCATTTCATATAATATCCCTTTCGGAGGGGTTTGATTTGTCGCCATTGTTTGAGGAGAAGAAGAGGGAGGAGAAGGAGGAGTTGAGATTCGCAACAGCGGGGCCGGCGAGTAGTGTGATATCGAAATTGGAAGAAGTGGCGAAGGCAGTGAAGTTTGATGTGAAGAAGAGTGAAACTCGAGTGAGGTTGCAGGGGCAGGAGAAGGGGAGGAAAGGGAAATTGGCGATCGCGGCGGATATTTTCGCGGTTACGCCGACGTTTATGGTGGTGGAAGTGAAGAAGGATAATGGTGATACATTGGAGTATAATCAATTCTGTAGGAAGGAGCTTCGGCCGGCGTTGAAGGATATTGTCTGGACCACTTCCCCTGCTGCCCCTGCTTGA | 1290 | 48.45 | MADKGRDIFVGGGGSLLDGKYELGRLLGHGTFAKVYHARNLRTGRSVAMKVVGKEKIIKVGMTEQIKREISVMKMMKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDENGNLKVTDFGLTALSENLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILFVLLAGYLPFQDENLVAMYRKIYRGDFKCPAWFSPEARRLITKLLDPNPVTRIGIEKIMSSSWFKKSISRAGTGAVKEEEKEIEEKSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATAGPASSVISKLEEVAKAVKFDVKKSETRVRLQGQEKGRKGKLAIAADIFAVTPTFMVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTTSPAAPA | 429 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2517667 | 2518956 | - | evm.model.ptg000016l.854 | HCH10g0306 | 552379 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0306 | 429 | FunFam | Non-specific serine/threonine protein kinase | 13 | 303 | - | - | |
HCH10g0306 | 429 | SUPERFAMILY | Protein kinase-like (PK-like) | 18 | 282 | IPR011009 | - | |
HCH10g0306 | 429 | ProSiteProfiles | Protein kinase domain profile. | 21 | 275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g0306 | 429 | Gene3D | Phosphorylase Kinase; domain 1 | 19 | 102 | - | - | |
HCH10g0306 | 429 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 13 | 414 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
HCH10g0306 | 429 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 139 | 151 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
HCH10g0306 | 429 | Pfam | NAF domain | 299 | 358 | IPR004041 | GO:0007165(InterPro) | |
HCH10g0306 | 429 | FunFam | Non-specific serine/threonine protein kinase | 296 | 421 | - | - | |
HCH10g0306 | 429 | Pfam | Protein kinase domain | 21 | 275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g0306 | 429 | Gene3D | Kinase associated domain 1, KA1 | 295 | 422 | - | - | |
HCH10g0306 | 429 | SMART | serkin_6 | 21 | 275 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
HCH10g0306 | 429 | ProSitePatterns | Protein kinases ATP-binding region signature. | 27 | 54 | IPR017441 | GO:0005524(InterPro) | |
HCH10g0306 | 429 | FunFam | Non-specific serine/threonine protein kinase | 14 | 100 | - | - | |
HCH10g0306 | 429 | CDD | CIPK_C | 302 | 417 | - | - | |
HCH10g0306 | 429 | ProSiteProfiles | NAF domain profile. | 296 | 320 | IPR018451 | GO:0007165(InterPro) | |
HCH10g0306 | 429 | CDD | STKc_SnRK3 | 20 | 274 | - | - | |
HCH10g0306 | 429 | Gene3D | Transferase(Phosphotransferase) domain 1 | 103 | 282 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0306 | HCH-Chr10:2517667 | HCH3g0713 | HCH-Chr3:5105713 | 1.10E-152 | dispersed | |
HCH11g0151 | HCH-Chr11:1594205 | HCH10g0306 | HCH-Chr10:2517667 | 1.10E-43 | transposed | |
HCH6g1548 | HCH-Chr6:48864907 | HCH10g0306 | HCH-Chr10:2517667 | 1.20E-101 | transposed | |
HCH10g0306 | HCH-Chr10:2517667 | HCH8g0925 | HCH-Chr8:45556791 | 1.60E-199 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
80978 | PF00069 | Pkinase | 6.80E-73 | CL0016 | HCH | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0306 | - | - | - | 0.0 |