Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0306 ATGGCGGATAAAGGAAGAGATATCTTCGTCGGAGGCGGCGGCAGTCTTCTTGACGGAAAATACGAGCTTGGCCGTCTACTCGGTCACGGAACATTCGCGAAAGTCTACCACGCTCGTAACCTCCGTACAGGAAGAAGCGTAGCGATGAAAGTCGTCGGAAAAGAAAAGATAATAAAAGTAGGAATGACGGAGCAAATCAAGAGAGAAATCTCCGTAATGAAAATGATGAAGCATCCGAACATCGTCGAGCTTCACGAAGTAATGGCGAGCAAATCCAAAATCTATTTCGCGATGGAACTCGTAAGAGGCGGCGAGCTTTTCTCCAAAATCGCCAAAGGCCGATTACGAGAAGACGTAGCTAGGGTTTACTTTCAGCAACTGATTTCCGCGATCGATTTCTGTCACAGCCGCGGCGTTTATCACCGTGACCTAAAACCAGAAAATCTCCTCCTCGACGAAAACGGAAACCTAAAAGTCACCGATTTTGGCCTCACGGCGTTATCGGAGAATTTAAAACAAGACGGATTATTGCACACCACGTGCGGCACTCCTGCTTACGTGGCACCGGAGGTTATCGGAAAGCAAGGATACGACGGAGCCAAGGCGGATTTATGGTCTTGTGGTGTGATATTGTTCGTTTTACTTGCTGGTTATCTTCCTTTTCAGGATGAGAATCTCGTCGCGATGTACCGGAAAATTTACCGAGGGGATTTCAAGTGTCCGGCGTGGTTTTCGCCGGAAGCTCGTAGATTGATCACCAAGCTTCTCGATCCAAATCCAGTCACGCGAATTGGGATCGAGAAGATAATGTCATCGTCGTGGTTTAAGAAATCAATATCGAGGGCGGGGACGGGGGCTGTGAAAGAGGAGGAGAAGGAAATTGAGGAGAAATCAGAGACATTGAATGCATTTCATATAATATCCCTTTCGGAGGGGTTTGATTTGTCGCCATTGTTTGAGGAGAAGAAGAGGGAGGAGAAGGAGGAGTTGAGATTCGCAACAGCGGGGCCGGCGAGTAGTGTGATATCGAAATTGGAAGAAGTGGCGAAGGCAGTGAAGTTTGATGTGAAGAAGAGTGAAACTCGAGTGAGGTTGCAGGGGCAGGAGAAGGGGAGGAAAGGGAAATTGGCGATCGCGGCGGATATTTTCGCGGTTACGCCGACGTTTATGGTGGTGGAAGTGAAGAAGGATAATGGTGATACATTGGAGTATAATCAATTCTGTAGGAAGGAGCTTCGGCCGGCGTTGAAGGATATTGTCTGGACCACTTCCCCTGCTGCCCCTGCTTGA 1290 48.45 MADKGRDIFVGGGGSLLDGKYELGRLLGHGTFAKVYHARNLRTGRSVAMKVVGKEKIIKVGMTEQIKREISVMKMMKHPNIVELHEVMASKSKIYFAMELVRGGELFSKIAKGRLREDVARVYFQQLISAIDFCHSRGVYHRDLKPENLLLDENGNLKVTDFGLTALSENLKQDGLLHTTCGTPAYVAPEVIGKQGYDGAKADLWSCGVILFVLLAGYLPFQDENLVAMYRKIYRGDFKCPAWFSPEARRLITKLLDPNPVTRIGIEKIMSSSWFKKSISRAGTGAVKEEEKEIEEKSETLNAFHIISLSEGFDLSPLFEEKKREEKEELRFATAGPASSVISKLEEVAKAVKFDVKKSETRVRLQGQEKGRKGKLAIAADIFAVTPTFMVVEVKKDNGDTLEYNQFCRKELRPALKDIVWTTSPAAPA 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2517667 2518956 - evm.model.ptg000016l.854 HCH10g0306 552379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0306 429 FunFam Non-specific serine/threonine protein kinase 13 303 - -
HCH10g0306 429 SUPERFAMILY Protein kinase-like (PK-like) 18 282 IPR011009 -
HCH10g0306 429 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0306 429 Gene3D Phosphorylase Kinase; domain 1 19 102 - -
HCH10g0306 429 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 13 414 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
HCH10g0306 429 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0306 429 Pfam NAF domain 299 358 IPR004041 GO:0007165(InterPro)
HCH10g0306 429 FunFam Non-specific serine/threonine protein kinase 296 421 - -
HCH10g0306 429 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0306 429 Gene3D Kinase associated domain 1, KA1 295 422 - -
HCH10g0306 429 SMART serkin_6 21 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0306 429 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524(InterPro)
HCH10g0306 429 FunFam Non-specific serine/threonine protein kinase 14 100 - -
HCH10g0306 429 CDD CIPK_C 302 417 - -
HCH10g0306 429 ProSiteProfiles NAF domain profile. 296 320 IPR018451 GO:0007165(InterPro)
HCH10g0306 429 CDD STKc_SnRK3 20 274 - -
HCH10g0306 429 Gene3D Transferase(Phosphotransferase) domain 1 103 282 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0306 HCH-Chr10:2517667 HCH3g0713 HCH-Chr3:5105713 1.10E-152 dispersed
HCH11g0151 HCH-Chr11:1594205 HCH10g0306 HCH-Chr10:2517667 1.10E-43 transposed
HCH6g1548 HCH-Chr6:48864907 HCH10g0306 HCH-Chr10:2517667 1.20E-101 transposed
HCH10g0306 HCH-Chr10:2517667 HCH8g0925 HCH-Chr8:45556791 1.60E-199 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80978 PF00069 Pkinase 6.80E-73 CL0016 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0306 - - - 0.0