Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
HCH10g0311 | ATGTTTGACTGTGGTTACAAGTCACAAGTGATGGGGGGTCAGCGTGAAAAGTTTGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCTCCTTCTGATAGTGGAATGAGAAGGTGTGGCTTTAACATAGATGGATTCAATCGTGCAGTTCATGGAAATGATAAACCATCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCAGAAGGACTTAAATCTATTGGTCGATCACTCAGATTTGGGGTTTCCCGAGCCGTATTCCCAGAGGATCTCAAAGAGTCAGAAAAGAAGATCTTTGATCCTCAAGACAAAGTGCTCTTATTTTTAAATAAACTTTTTGTCGTATCATGTTTTGTGGCAATATCTGTGGATCCACTATTCTTTTATGTTCCGGTCATTAACCAAACCTCGAATTGTCTTGGTATTGATAGAAAGCTGGCTATTACGGTTACAACATTGCGCACAGTTATTGATGTCTTCTATCTTGTTCATATGGCACTCCAATTCCGAACAGCTTATATTGCTCCATCATCTCGGGTTTTTGGGAGAGGTGAACTTGTGATAGATCCTGCACAAATAGCCAAGCGATACTTGCGGCGGTATTTCATCATTGATTTCATTTCTGTGCTACCTCTTCCGCAGATTGTGGTTTGGAGATTTCTTCAGAAATCAAGAGGTTCAGATGTATATGCGACAAAACAGGCGTTGCTTTTCATTGTATTCGTTCAATATATCCCAAGATTTCTTAGAGCATTTCCTTTGGCTTCAGAATTGAAAAGGACAGCTGGCGTGTTTGCAGAAACTGCTTGGGCTGGTGCAGCATATTATCTGCTATTATACATGCTTGCTAGTCATATAGTTGGGGCATTATGGTACTTATTAGCTGTGGAACGCAATGATACATGCTGGCAGAGGTTTTGTAAAGTGGATTGCAAGAAAGATTTCTTGTATTGTGGTAACCAATTTATGGAAGGTTATATAAAGTGGAATAACACGGGGCCAGCTAACCTTCAGGAAATGTGCAAACCTGATGATGATAACAATAATTTTGATTTTGGAATCTTTCAACAGGCCTTATCCTCTGGTATTGCTTCCTCCATGAATTTCATCACCAAATATTGTTACTGCCTGTGGTGGGGGCTACAAAATTTAAGTACCCTTGGGCAGGGGCTTCAAACAAGCACCTACCCTGGAGAAGTGATATTTTCTATAGCATTGGCTGTACTTGGACTCATCCTCTTTGCACTTCTTATTGGCAACATGCAGACTTATCTCCAATCTCTAACTATAAGGCTCGAGGAAATGAGGGTGAAAAGGCGTGACTCAGAGCAGTGGATGCATCACCGCTTGCTGCCTCAGGAACTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAGACCCGTGGGGTGGATGAACAGAGTTTGGTTGAGACTCTACCAAAGGATCTGAGGAGAGACATTAAGCGACATCTCTGCCTGGCTTTAGTGAGGAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCCATTTGTGAGCGGCTGAAACCATGTTTGTTTACAGAGTACACTTACATAGTCCGTGAAGGTGATCCGGTTGATGAGATGCTTTTCATTATCCGTGGTCGTCTTGAGAGTGTAACTACAGATGGTGGAAGGAGCGGATTCTTCAATCGCACCTTTCTGAAAGAAGGCGATTTTTGCGGTGAAGAGCTTTTGACCTGGGCTCTGGATCCCAAATCTGGTGCAAACCTTCCATCTTCTACAAGAACGGTAAGGGCCATTACAGAGGTTGAGGCTTTTGCCCTTTTTGCTGAAGAGTTGAAATTTGTTGCCAGTCAATTCAGACGCCTTCACAGCAGGCAGGTGCAGCATACCTTCCGATTTTACTCACAGCAGTGGAGAGCCTGGGCTGCCTGCTTCATCCAAGCAGCATGGCGTCGGTATTCCAAGCGAAAGACTATGGAGCTTCGTCAAAAGGAAGAAGAAGCCGCTGCAGGAGAATCTGAGGGCTCTCACAATACTGTGAGTATCGGTGCAACTTTCTTAGCCACCAGATTTGCTGCGAATGCTATGCGGGGTGTTCAGCGCTTTCGAAATGCGAAGAGTGCTCAGGAATTGATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGTGCTGATGATGCTGACTGA | 2190 | 44.02 | MFDCGYKSQVMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLRFGVSRAVFPEDLKESEKKIFDPQDKVLLFLNKLFVVSCFVAISVDPLFFYVPVINQTSNCLGIDRKLAITVTTLRTVIDVFYLVHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFISVLPLPQIVVWRFLQKSRGSDVYATKQALLFIVFVQYIPRFLRAFPLASELKRTAGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQRFCKVDCKKDFLYCGNQFMEGYIKWNNTGPANLQEMCKPDDDNNNFDFGIFQQALSSGIASSMNFITKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVETLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGANLPSSTRTVRAITEVEAFALFAEELKFVASQFRRLHSRQVQHTFRFYSQQWRAWAACFIQAAWRRYSKRKTMELRQKEEEAAAGESEGSHNTVSIGATFLATRFAANAMRGVQRFRNAKSAQELIKLQKPPEPDFSADDAD | 729 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 2559090 | 2564961 | - | evm.model.ptg000016l.849 | HCH10g0311 | 552384 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
HCH10g0311 | 729 | FunFam | Cyclic nucleotide-gated ion channel 1 | 431 | 495 | - | - | |
HCH10g0311 | 729 | FunFam | Cyclic nucleotide-gated ion channel 1 | 502 | 620 | - | - | |
HCH10g0311 | 729 | SMART | cnmp_10 | 504 | 635 | IPR000595 | - | |
HCH10g0311 | 729 | Gene3D | Helix hairpin bin | 432 | 495 | - | - | |
HCH10g0311 | 729 | SUPERFAMILY | cAMP-binding domain-like | 433 | 624 | IPR018490 | - | |
HCH10g0311 | 729 | SUPERFAMILY | Voltage-gated potassium channels | 101 | 426 | - | - | |
HCH10g0311 | 729 | Pfam | Ion transport protein | 113 | 430 | IPR005821 | GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
HCH10g0311 | 729 | Gene3D | Jelly Rolls | 502 | 622 | IPR014710 | - | |
HCH10g0311 | 729 | Pfam | Cyclic nucleotide-binding domain | 529 | 615 | IPR000595 | - | |
HCH10g0311 | 729 | CDD | CAP_ED | 504 | 635 | IPR000595 | - | |
HCH10g0311 | 729 | ProSiteProfiles | IQ motif profile. | 640 | 669 | - | - | |
HCH10g0311 | 729 | ProSiteProfiles | cAMP/cGMP binding motif profile. | 504 | 586 | IPR000595 | - | |
HCH10g0311 | 729 | PANTHER | CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED | 83 | 714 | - | - | |
HCH10g0311 | 729 | PRINTS | EAG/ELK/ERG potassium channel family signature | 154 | 164 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH10g0311 | 729 | PRINTS | EAG/ELK/ERG potassium channel family signature | 417 | 426 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH10g0311 | 729 | PRINTS | EAG/ELK/ERG potassium channel family signature | 282 | 292 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH10g0311 | 729 | PRINTS | EAG/ELK/ERG potassium channel family signature | 467 | 474 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH10g0311 | 729 | PRINTS | EAG/ELK/ERG potassium channel family signature | 165 | 174 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH10g0311 | 729 | PRINTS | EAG/ELK/ERG potassium channel family signature | 373 | 390 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH10g0311 | 729 | PRINTS | EAG/ELK/ERG potassium channel family signature | 399 | 410 | IPR003938 | GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro) | |
HCH10g0311 | 729 | Gene3D | - | 112 | 429 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
HCH10g0311 | HCH-Chr10:2559090 | HCH5g0868 | HCH-Chr5:7137778 | 1.10E-211 | dispersed | |
HCH10g0311 | HCH-Chr10:2559090 | HCH9g0186 | HCH-Chr9:1095262 | 1.10E-304 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
HCH10g0311 | K05391 | - | csv:101219180 | 1294.26 |