Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0311 ATGTTTGACTGTGGTTACAAGTCACAAGTGATGGGGGGTCAGCGTGAAAAGTTTGTGAGGTTGGATGACTTGGACTCTAGATTGTCATCTCCTTCTGATAGTGGAATGAGAAGGTGTGGCTTTAACATAGATGGATTCAATCGTGCAGTTCATGGAAATGATAAACCATCTGGATCCTTTAAGAGAGGAATGAGGAAAGGGTCAGAAGGACTTAAATCTATTGGTCGATCACTCAGATTTGGGGTTTCCCGAGCCGTATTCCCAGAGGATCTCAAAGAGTCAGAAAAGAAGATCTTTGATCCTCAAGACAAAGTGCTCTTATTTTTAAATAAACTTTTTGTCGTATCATGTTTTGTGGCAATATCTGTGGATCCACTATTCTTTTATGTTCCGGTCATTAACCAAACCTCGAATTGTCTTGGTATTGATAGAAAGCTGGCTATTACGGTTACAACATTGCGCACAGTTATTGATGTCTTCTATCTTGTTCATATGGCACTCCAATTCCGAACAGCTTATATTGCTCCATCATCTCGGGTTTTTGGGAGAGGTGAACTTGTGATAGATCCTGCACAAATAGCCAAGCGATACTTGCGGCGGTATTTCATCATTGATTTCATTTCTGTGCTACCTCTTCCGCAGATTGTGGTTTGGAGATTTCTTCAGAAATCAAGAGGTTCAGATGTATATGCGACAAAACAGGCGTTGCTTTTCATTGTATTCGTTCAATATATCCCAAGATTTCTTAGAGCATTTCCTTTGGCTTCAGAATTGAAAAGGACAGCTGGCGTGTTTGCAGAAACTGCTTGGGCTGGTGCAGCATATTATCTGCTATTATACATGCTTGCTAGTCATATAGTTGGGGCATTATGGTACTTATTAGCTGTGGAACGCAATGATACATGCTGGCAGAGGTTTTGTAAAGTGGATTGCAAGAAAGATTTCTTGTATTGTGGTAACCAATTTATGGAAGGTTATATAAAGTGGAATAACACGGGGCCAGCTAACCTTCAGGAAATGTGCAAACCTGATGATGATAACAATAATTTTGATTTTGGAATCTTTCAACAGGCCTTATCCTCTGGTATTGCTTCCTCCATGAATTTCATCACCAAATATTGTTACTGCCTGTGGTGGGGGCTACAAAATTTAAGTACCCTTGGGCAGGGGCTTCAAACAAGCACCTACCCTGGAGAAGTGATATTTTCTATAGCATTGGCTGTACTTGGACTCATCCTCTTTGCACTTCTTATTGGCAACATGCAGACTTATCTCCAATCTCTAACTATAAGGCTCGAGGAAATGAGGGTGAAAAGGCGTGACTCAGAGCAGTGGATGCATCACCGCTTGCTGCCTCAGGAACTTCGGGAGAGAGTCAGGCGTTATGATCAGTACAAGTGGTTGGAGACCCGTGGGGTGGATGAACAGAGTTTGGTTGAGACTCTACCAAAGGATCTGAGGAGAGACATTAAGCGACATCTCTGCCTGGCTTTAGTGAGGAGGGTTCCTCTGTTTGAAAACATGGACGAGAGGCTGCTTGATGCCATTTGTGAGCGGCTGAAACCATGTTTGTTTACAGAGTACACTTACATAGTCCGTGAAGGTGATCCGGTTGATGAGATGCTTTTCATTATCCGTGGTCGTCTTGAGAGTGTAACTACAGATGGTGGAAGGAGCGGATTCTTCAATCGCACCTTTCTGAAAGAAGGCGATTTTTGCGGTGAAGAGCTTTTGACCTGGGCTCTGGATCCCAAATCTGGTGCAAACCTTCCATCTTCTACAAGAACGGTAAGGGCCATTACAGAGGTTGAGGCTTTTGCCCTTTTTGCTGAAGAGTTGAAATTTGTTGCCAGTCAATTCAGACGCCTTCACAGCAGGCAGGTGCAGCATACCTTCCGATTTTACTCACAGCAGTGGAGAGCCTGGGCTGCCTGCTTCATCCAAGCAGCATGGCGTCGGTATTCCAAGCGAAAGACTATGGAGCTTCGTCAAAAGGAAGAAGAAGCCGCTGCAGGAGAATCTGAGGGCTCTCACAATACTGTGAGTATCGGTGCAACTTTCTTAGCCACCAGATTTGCTGCGAATGCTATGCGGGGTGTTCAGCGCTTTCGAAATGCGAAGAGTGCTCAGGAATTGATAAAATTGCAGAAGCCTCCAGAGCCAGATTTTAGTGCTGATGATGCTGACTGA 2190 44.02 MFDCGYKSQVMGGQREKFVRLDDLDSRLSSPSDSGMRRCGFNIDGFNRAVHGNDKPSGSFKRGMRKGSEGLKSIGRSLRFGVSRAVFPEDLKESEKKIFDPQDKVLLFLNKLFVVSCFVAISVDPLFFYVPVINQTSNCLGIDRKLAITVTTLRTVIDVFYLVHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFISVLPLPQIVVWRFLQKSRGSDVYATKQALLFIVFVQYIPRFLRAFPLASELKRTAGVFAETAWAGAAYYLLLYMLASHIVGALWYLLAVERNDTCWQRFCKVDCKKDFLYCGNQFMEGYIKWNNTGPANLQEMCKPDDDNNNFDFGIFQQALSSGIASSMNFITKYCYCLWWGLQNLSTLGQGLQTSTYPGEVIFSIALAVLGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLETRGVDEQSLVETLPKDLRRDIKRHLCLALVRRVPLFENMDERLLDAICERLKPCLFTEYTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRTFLKEGDFCGEELLTWALDPKSGANLPSSTRTVRAITEVEAFALFAEELKFVASQFRRLHSRQVQHTFRFYSQQWRAWAACFIQAAWRRYSKRKTMELRQKEEEAAAGESEGSHNTVSIGATFLATRFAANAMRGVQRFRNAKSAQELIKLQKPPEPDFSADDAD 729
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2559090 2564961 - evm.model.ptg000016l.849 HCH10g0311 552384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0311 729 FunFam Cyclic nucleotide-gated ion channel 1 431 495 - -
HCH10g0311 729 FunFam Cyclic nucleotide-gated ion channel 1 502 620 - -
HCH10g0311 729 SMART cnmp_10 504 635 IPR000595 -
HCH10g0311 729 Gene3D Helix hairpin bin 432 495 - -
HCH10g0311 729 SUPERFAMILY cAMP-binding domain-like 433 624 IPR018490 -
HCH10g0311 729 SUPERFAMILY Voltage-gated potassium channels 101 426 - -
HCH10g0311 729 Pfam Ion transport protein 113 430 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
HCH10g0311 729 Gene3D Jelly Rolls 502 622 IPR014710 -
HCH10g0311 729 Pfam Cyclic nucleotide-binding domain 529 615 IPR000595 -
HCH10g0311 729 CDD CAP_ED 504 635 IPR000595 -
HCH10g0311 729 ProSiteProfiles IQ motif profile. 640 669 - -
HCH10g0311 729 ProSiteProfiles cAMP/cGMP binding motif profile. 504 586 IPR000595 -
HCH10g0311 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 83 714 - -
HCH10g0311 729 PRINTS EAG/ELK/ERG potassium channel family signature 154 164 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH10g0311 729 PRINTS EAG/ELK/ERG potassium channel family signature 417 426 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH10g0311 729 PRINTS EAG/ELK/ERG potassium channel family signature 282 292 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH10g0311 729 PRINTS EAG/ELK/ERG potassium channel family signature 467 474 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH10g0311 729 PRINTS EAG/ELK/ERG potassium channel family signature 165 174 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH10g0311 729 PRINTS EAG/ELK/ERG potassium channel family signature 373 390 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH10g0311 729 PRINTS EAG/ELK/ERG potassium channel family signature 399 410 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
HCH10g0311 729 Gene3D - 112 429 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0311 HCH-Chr10:2559090 HCH5g0868 HCH-Chr5:7137778 1.10E-211 dispersed
HCH10g0311 HCH-Chr10:2559090 HCH9g0186 HCH-Chr9:1095262 1.10E-304 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0311 K05391 - csv:101219180 1294.26