Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0343 ATGTGTGTGACAGATGCTGAGAAGGGAAATTCTGACACTAATAATAGCAAGCCATGGCCTTTGCATTGTGATTTTTTGAACACCCAGATGGGGAATCGTGATAAGGAGCCTTCTCTCACTAGCACTAGTGAGAGAAACCGTTCTGGGAATTCATTTCCTCTTGAAAGCATATCTGAAGATGCTGCAGTTACAGACAGAAAAGAGAACCCATCTGGTTTTGTCCCTGCTCTTAGGTCAGGAGAATGGTCTGATATTGGAAAACGTCCTTATATGGAGGACACTCACGTATGCATTAGTGACTTGTCTAAGAAGTTTGGTCGTGGTTTACTCAATGAGGAAGCTGTCTCCTTCTATGGTGTATTTGATGGTCATGGAGGAAAGGATGCCGCCCAATTTGTGCGTGAACACTTGCCAAGAATCATTGTTGAAGATGCTGACTTCCCTTTAGAGCTTGAAAAGGTGGTCACAAGGTCATTTATGGAAACTGATGCAGCGTTTGCTAGGTCGTGCTCTGTTGTGACATCACAGTCATCTGGCACAACTGCACTGACTGCAATGATATTTGGAAGGTCTTTGCTTGTAGCAAATGCTGGTGATTGTCGAGCAGTAATATCAAGACAAGGAGGTGCGATAGAAATGTCGAAAGACCACAGGCCATGCTGTACTAAAGAAAGAAAGCGTATCGAGTCTTTGGGCGGGTTCATTGACGATGATTATCTAAATGGTCTGCTTGGGGTCACTCGTGCTATAGGAGATTGGCATCTTGAAGGAATGAAAGAAATGAGTGAAAGAGGTGGACCATTAAGTGCTGAACCTGAACTCAAATTAATGACATTGACAAAGGAGGACGAGTTTTTGATCATAGGTAGTGACGGAGTATGGGACGTCTTCACGAGTCAAAATGCTGTCGATTTTGCTCGGAGGAAGCTTCAAGAGCACAATAATTTGAAAGTTTGCTGCAAGGAAATAGTAGAGGAAGCCATGAAGAGGGGAGCAACAGATAATTTAACAGTGGTATTGGTTAGTTTTCACTCGGAGCCACCTCCACCTGTAGTTTTTCAGAGGCCAAGAGTTAGAAGAAGCATTTCTGCTGAGGGACTTCAAAACCTCAAGTTTCTTCTAGAAGGATAA 1131 43.41 MCVTDAEKGNSDTNNSKPWPLHCDFLNTQMGNRDKEPSLTSTSERNRSGNSFPLESISEDAAVTDRKENPSGFVPALRSGEWSDIGKRPYMEDTHVCISDLSKKFGRGLLNEEAVSFYGVFDGHGGKDAAQFVREHLPRIIVEDADFPLELEKVVTRSFMETDAAFARSCSVVTSQSSGTTALTAMIFGRSLLVANAGDCRAVISRQGGAIEMSKDHRPCCTKERKRIESLGGFIDDDYLNGLLGVTRAIGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIGSDGVWDVFTSQNAVDFARRKLQEHNNLKVCCKEIVEEAMKRGATDNLTVVLVSFHSEPPPPVVFQRPRVRRSISAEGLQNLKFLLEG 376
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2772309 2777503 + evm.model.ptg000016l.817 HCH10g0343 552416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0343 376 CDD PP2Cc 78 343 IPR001932 -
HCH10g0343 376 MobiDBLite consensus disorder prediction 31 57 - -
HCH10g0343 376 MobiDBLite consensus disorder prediction 7 22 - -
HCH10g0343 376 SUPERFAMILY PP2C-like 69 345 IPR036457 -
HCH10g0343 376 ProSitePatterns PPM-type phosphatase domain signature. 117 125 IPR000222 GO:0043169(InterPro)
HCH10g0343 376 FunFam Probable protein phosphatase 2C 22 61 346 - -
HCH10g0343 376 Pfam Protein phosphatase 2C 90 335 IPR001932 -
HCH10g0343 376 MobiDBLite consensus disorder prediction 1 72 - -
HCH10g0343 376 PANTHER PROTEIN PHOSPHATASE 2C 61 343 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
HCH10g0343 376 Gene3D - 59 347 IPR036457 -
HCH10g0343 376 ProSiteProfiles PPM-type phosphatase domain profile. 78 343 IPR001932 -
HCH10g0343 376 SMART PP2C_4 68 341 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0343 HCH-Chr10:2772309 HCH12g0048 HCH-Chr12:251006 1.90E-90 dispersed
HCH10g0343 HCH-Chr10:2772309 HCH4g1258 HCH-Chr4:8649790 2.50E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32429 PF00481 PP2C 1.60E-67 CL0238 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0343 K14803 - csv:101210349 650.203