Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g0354 | ATGTCAGGTTGGGATGAAGGAGGAATCTACTACAGCGATCAAGCTCAATCCCTCGGCGACGGAACCGGTATCGGCGGCCGTGGAGGAGATGTCGAAGAGAAAGCCACTCATCACTCCGTCCTTCAAAAATTGAAGGAATTTATCCGTGGTTATGAATCCGATAATAACGTATTCCCTTATAGAGAGAGCCTTCTCCACAATCCTAAATTGCTTCGTGTGGATATGGAAGACATTAATGCTTTCGATTCCGATCTTCCGGCTAAGCTTCGATCCGCTCCTGCTGATTACTTGCCTTTGTTTGAGACTGCTGCGGCGGAGGTTTTAATGAATTTAAAGACGAAGGTGGCCGGTGAGACCGGAGAAATGGTGGACCCTGTGCCTGGGGATGTTCAAATTCTTCTTTCATCGAGGGAGGATCCGGTCTCGATGCGTTCACTTGGGGCTCAATATATTTCAAAACTTGTTAAAATATCTGGGATCACCATAGCTGCGTCGAGGACTAAGGCAAAGGCAACATATGTAACCTTGTTATGTAAGAATTGTAGAAGTATGCTAAAAGTTCCGTGTCGGCCGGGACTTGGAGGGGCAATTGTCCCCCGATCATGTAATCACATGCCTCAGGCAGGAGAAGAACCATGCCCTTTGGATCCTTGGATTGTGGTTCCTGACAAGAGTATGTACGTTGATCAACAAACTTTAAAACTGCAGGAAAATCCAGAGGATGTCCCAACTGGAGAGCTTCCTCGGAACATGCTTCTATCAGTGGACCGCCATCTCGTTCAAACAATTGTTCCAGGCACTAGATTGACCATCATGGGAATATATAGTGTCTATCAAGCTGCCAATTCTTCTACATCTAGCCACAAAGGAGCAGTTGCAATTAGACAGCCTTATATCAGGGTTGTAGGAATTGAAGAATCAATTGAGGCCAACTCTCGAAGTCCTTCATCTTTTACACCAGAAGATATCGAGGAGTTCAAAAAATTTGCATCTGAGCCTGATGTCTACAAAATCATATGTTCAAAGATTGCCCCCTCTATATTTGGTCATGAAGATGTGAAGAAGGCTGTGGCTTGTCTTCTGTTTGGAGGATCCAGGAAGAATTTGCCAGATGGGGTTAAGTTAAGAGGTGATATAAATGTATTGCTTCTGGGGGACCCATCAACAGCTAAGTCTCAGTTTCTCAAGTTTGTTGAAAAGACAGCTCCAGTTGCTGTGTATACTTCTGGAAAAGGTTCATCAGCTGCTGGTCTTACAGCGTCAGTAATACGAGATAACAGCTCTCGAGAATTTTATCTTGAAGGAGGTGCCATGGTTTTGGCTGATGGAGGTGTTGTCTGCATTGATGAGTTTGACAAAATGAGATCAGAGGATAGAGTCGCGATTCATGAAGCCATGGAACAACAGACAATATCAATTGCAAAAGCAGGAATAACAACAGTTCTTAATTCCAGAACCTCAGTCCTTGCAGCTGCTAATCCTCCATCTGGACGTTATGATGATCTGAAGACTGCACAGGATAACATTGATTTGCAGACGACAATTCTATCCAGATTTGATTTAATCTTCATTGTGAAAGATATAAGGATGTACAGTCAAGATAAGATTATAGCAAGCCATATAATAAAAATTCATGCATCTGCTGATTCAACCTTAGGTGAAAGTAAAACTTCTAAAGAAGAGAATTGGCTTAAGAGGTATATTCAATTTTGTCGAACTGAATGTCATCCGCGTTTGTCAGAATCTGCATCCAAAAAGCTGCAGGATAGTTATGTCAAAATCAGACAGGACATGAGGCAACAGGCGAATGAAACCGGGGAGGCTGCTGCAATACCTATTACTGTGAGGCAGCTGGAAGCCATTGTAAGGCTAAGTGAGGCACTTGCAAAAATGAAGTTGTCCCATGTTGCCACTGAGGAAAATGTGCAGGAGGCTATCAGACTTTTTACTGTGGCCACAATGGACGCAGCACGCTCTGGGATTCATCAACAAGTAAATCTGACTCCTGAGATGGCTAATGAAATAAAGCAAGCAGAAACCCAGATCAAGAGAAGAATAGGGATCGGCAACCATATATCCGAGAGAAGACTAATTGATGAGCTCTCCAGAATGGGGATGAACGAGTCCATTGTGAGACGAGCTCTCATTATTATGCACCAGAGAGACGAAGTTGAATACAAACGAGAACGGCGTGTTATTTACCGTAAGGCATGA | 2214 | 43.54 | MSGWDEGGIYYSDQAQSLGDGTGIGGRGGDVEEKATHHSVLQKLKEFIRGYESDNNVFPYRESLLHNPKLLRVDMEDINAFDSDLPAKLRSAPADYLPLFETAAAEVLMNLKTKVAGETGEMVDPVPGDVQILLSSREDPVSMRSLGAQYISKLVKISGITIAASRTKAKATYVTLLCKNCRSMLKVPCRPGLGGAIVPRSCNHMPQAGEEPCPLDPWIVVPDKSMYVDQQTLKLQENPEDVPTGELPRNMLLSVDRHLVQTIVPGTRLTIMGIYSVYQAANSSTSSHKGAVAIRQPYIRVVGIEESIEANSRSPSSFTPEDIEEFKKFASEPDVYKIICSKIAPSIFGHEDVKKAVACLLFGGSRKNLPDGVKLRGDINVLLLGDPSTAKSQFLKFVEKTAPVAVYTSGKGSSAAGLTASVIRDNSSREFYLEGGAMVLADGGVVCIDEFDKMRSEDRVAIHEAMEQQTISIAKAGITTVLNSRTSVLAAANPPSGRYDDLKTAQDNIDLQTTILSRFDLIFIVKDIRMYSQDKIIASHIIKIHASADSTLGESKTSKEENWLKRYIQFCRTECHPRLSESASKKLQDSYVKIRQDMRQQANETGEAAAIPITVRQLEAIVRLSEALAKMKLSHVATEENVQEAIRLFTVATMDAARSGIHQQVNLTPEMANEIKQAETQIKRRIGIGNHISERRLIDELSRMGMNESIVRRALIIMHQRDEVEYKRERRVIYRKA | 737 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 2860498 | 2865922 | + | evm.model.ptg000016l.806 | HCH10g0354 | 552427 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g0354 | 737 | ProSiteProfiles | MCM family domain profile. | 335 | 541 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH10g0354 | 737 | Pfam | MCM OB domain | 143 | 278 | IPR033762 | - | |
| HCH10g0354 | 737 | Pfam | MCM AAA-lid domain | 563 | 651 | IPR041562 | - | |
| HCH10g0354 | 737 | Pfam | MCM5, C-terminal domain | 677 | 735 | IPR054125 | - | |
| HCH10g0354 | 737 | SMART | mcm | 139 | 654 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 144 | 159 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 647 | 664 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 170 | 182 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 295 | 307 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein 5 signature | 571 | 586 | IPR008048 | GO:0003688(InterPro)|GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| HCH10g0354 | 737 | Gene3D | - | 316 | 672 | IPR027417 | - | |
| HCH10g0354 | 737 | FunFam | DNA helicase | 35 | 123 | - | - | |
| HCH10g0354 | 737 | Gene3D | - | 143 | 278 | IPR012340 | - | |
| HCH10g0354 | 737 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 34 | 726 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006270(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER)|GO:0043138(PANTHER) | |
| HCH10g0354 | 737 | SUPERFAMILY | Nucleic acid-binding proteins | 44 | 301 | IPR012340 | - | |
| HCH10g0354 | 737 | Pfam | MCM P-loop domain | 322 | 545 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH10g0354 | 737 | Gene3D | - | 36 | 121 | - | - | |
| HCH10g0354 | 737 | Pfam | MCM N-terminal domain | 43 | 112 | IPR027925 | - | |
| HCH10g0354 | 737 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 345 | 650 | IPR027417 | - | |
| HCH10g0354 | 737 | Gene3D | - | 170 | 228 | - | - | |
| HCH10g0354 | 737 | ProSitePatterns | MCM family signature. | 444 | 452 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| HCH10g0354 | 737 | FunFam | DNA helicase | 316 | 667 | - | - | |
| HCH10g0354 | 737 | CDD | MCM5 | 338 | 651 | - | - | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 436 | 450 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 376 | 391 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 488 | 500 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 464 | 477 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH10g0354 | 737 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 515 | 523 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| HCH10g0354 | 737 | FunFam | DNA helicase | 170 | 228 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0354 | HCH-Chr10:2860498 | HCH5g1143 | HCH-Chr5:38089525 | 1.90E-91 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g0354 | K02209 | - | csv:101211822 | 1326.61 |