Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0357 ATGGCTTCCAAAAGCTTCACCACCATCTTCTTCCTCCTCCTTTTCATACAATTTCAGCATTCCAATTCACAAAGTTGGATTAAAGCAGGTTATTGGTATGTTCATAGTATAACCACTATTCCTGAAATTGAATCTTCCTTATTTACTCACCTTATTTTTGCTTTCATGGAAGTAAACTCCTCAACATATGAGCTCTCCCTCCCCTCTACTGTTGAAAATTACTTCTCCATCTTCACTGCAACTGTAAAACTCAAGAACCCATCAGTTACAACACTATTTTCTATCTGGGATGGAGTGGATGCAACAAGAAAAGGAAGACTGGGTGAAAAAAACAACTTTTCAGTCCTATCTTCAATGGTTAAAAATTCATCTCACAGACAATCTTTTATTCAATCTTCAATAAGAATTGCAAGGCTATATAATTTTCAAGGCATAGATCTGTTTTGGGTTTGGCCAGTTATGGTTTCTGATATGGTGGATATTGGTTTTCTTTTGAATGAATGGAGAGTTGCTATAAATGAAGAGTCAAGAATATCAAGGCAATCACCATTGATACTTACAATGGGAGTTCATTACTTACCGGTTTATGAATCAGTGAATTACCCAATTGAGTCAATGAGGAGGAATTTGGATTGGGCACATATTTCAACTTATGACTATCATTTGCCATTAAAAAATAGAGAGGCAATTACAAACCCACATACAGCTTTATATGATCCATTAAGTAATGTCAATACTGATTATGGTGTAAGAGAATGGCTAAGTAAGGGTTTCCCTGCTAGCAAGTTAGTTTTGGGGTTGGCTTACCATGGCTATGCTTGGACTCTGGCAAATCCAAAAGAAAATGGCATTGGTGCCTTGTCATTTGGCCTGGCTGAGACACCAGATGGGTCGATGAGTTACAAGAAGATTAAGCAATATATTCGGAGTTATGGAGCGGTTGTCGAGTTCAACGCTACTTATGTCGTGAACTATTGCACCTTTCGATCCACTTGGATTAGTTATGATGATGTTGAAGCCATCAGAGTTAAGATTCATTATGCAAAAGGGAAAAAGCTACTTGGTTACTGTGTGTTTCAGGTCATCAATGATGATAACAGTATGCTTTCTCGTGCAGCTTCCCAAGAAGAGGGGTGGTCCCACAAAAAGAAGCATTGGCTATTACCTGTAATCATGCTTCCAAGTATATTGATCATTGTCCTATTAGCATCACTGATGTATTTCTATAGAACCAACATTTTTAAGTTACAAGGGATGATGAATTCAGGAAAAGCAGGTACTAAAGAAATGAGAAACTACATGTTATCTTATAGAGATTCTAATAGTCGAGCATCACATCTGCAAATATTCACCTTTTCAAGCATAGAAGCAGCTACAGATAAGTTTTCTAGAGCCAACAAGCTTGGAGAAGGTGGTTTTGGTCCTGTGTATAAGGGAAAATTGCAAGGTGATGAAATTGCAGTAAAAAGGCTCTCAAAATCATCAACTCAAGGAGTTGAAGAGTTCATGAACGAGGTTACGCTCACTGCGAGACTTCAGCATGTTAATCTTGTTAGAGTATTGGGATTTTGCACTGAGAAGGAAGAAAAGATGTTGATCTATGAGTACATGCCAAACAAAAGCCTTGATATCTACCTTTTCGATCCGCTTAGAAGTTATACATTAGACTGGATAAAACGTGTCGGGATAATTGAAGGCATTATTCAAGGACTTCTGTATCTTCAAGAATACTCGAATTTCACGATCATTCATCGCGACCTTAAAGGTAGCAATATTTTATTAGATCATGAAATGAAGCCAAAGATATCAGATTTTGGTTTGGCCAAACTTTTCAAGAAAGATGAAGTTGAAGCAAACACAAGCCATATTGTTGGAACATGTGGATATGTTCCTCCTGAATATTTAAGAAAAGGCATTTATTCCAGGAAGCATGATGTCTTTAGCTTTGGAGTTCTTCTTTTACAGATAATAAGTGGCAAGAGGAGTTCATGCTACTACGGCCAGCATGAAAATTTGACCCTTCTGGAACATGCATATCAAGTGTGGAAAGAAAAGAGAGGGAAGGAGTTTTTTGATCCATCACTGGATGATGCAATGACAGGTTGTAAACTAATGATTTGCTTGCAAGTAGCTTTGTTATGTGTTCAAGAAAGTCCAGAGGACAGACCTTCCATTTTAGAGGTTAATTCCATGCTTAAGAGTGGGATTGGAGCTGCCATTTCTTCCCCAAAAAGACCAGCTTTCTCATTGAAAATTGATGAAACTTCAGCAATCAGAGCCACAACAACATCTAAACAGGAAATTTTCTCAGTAAATGAGATTGAAATTTCCCTACTTATAGCTCGCTGA 2349 37.63 MASKSFTTIFFLLLFIQFQHSNSQSWIKAGYWYVHSITTIPEIESSLFTHLIFAFMEVNSSTYELSLPSTVENYFSIFTATVKLKNPSVTTLFSIWDGVDATRKGRLGEKNNFSVLSSMVKNSSHRQSFIQSSIRIARLYNFQGIDLFWVWPVMVSDMVDIGFLLNEWRVAINEESRISRQSPLILTMGVHYLPVYESVNYPIESMRRNLDWAHISTYDYHLPLKNREAITNPHTALYDPLSNVNTDYGVREWLSKGFPASKLVLGLAYHGYAWTLANPKENGIGALSFGLAETPDGSMSYKKIKQYIRSYGAVVEFNATYVVNYCTFRSTWISYDDVEAIRVKIHYAKGKKLLGYCVFQVINDDNSMLSRAASQEEGWSHKKKHWLLPVIMLPSILIIVLLASLMYFYRTNIFKLQGMMNSGKAGTKEMRNYMLSYRDSNSRASHLQIFTFSSIEAATDKFSRANKLGEGGFGPVYKGKLQGDEIAVKRLSKSSTQGVEEFMNEVTLTARLQHVNLVRVLGFCTEKEEKMLIYEYMPNKSLDIYLFDPLRSYTLDWIKRVGIIEGIIQGLLYLQEYSNFTIIHRDLKGSNILLDHEMKPKISDFGLAKLFKKDEVEANTSHIVGTCGYVPPEYLRKGIYSRKHDVFSFGVLLLQIISGKRSSCYYGQHENLTLLEHAYQVWKEKRGKEFFDPSLDDAMTGCKLMICLQVALLCVQESPEDRPSILEVNSMLKSGIGAAISSPKRPAFSLKIDETSAIRATTTSKQEIFSVNEIEISLLIAR 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2875594 2879364 - evm.model.ptg000016l.803 HCH10g0357 552430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0357 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 537 739 - -
HCH10g0357 782 Pfam Protein kinase domain 463 728 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0357 782 SMART serkin_6 462 732 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0357 782 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
HCH10g0357 782 Gene3D - 269 335 IPR029070 -
HCH10g0357 782 SUPERFAMILY Chitinase insertion domain 271 335 IPR029070 -
HCH10g0357 782 SMART 2g34 26 364 IPR011583 GO:0008061(InterPro)
HCH10g0357 782 ProSiteProfiles Protein kinase domain profile. 462 732 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
HCH10g0357 782 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 426 536 - -
HCH10g0357 782 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 342 748 - GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)
HCH10g0357 782 CDD STKc_IRAK 468 733 - -
HCH10g0357 782 Gene3D Glycosidases 43 364 - -
HCH10g0357 782 Gene3D Transferase(Phosphotransferase) domain 1 537 740 - -
HCH10g0357 782 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 26 380 IPR001223 GO:0005975(InterPro)
HCH10g0357 782 SUPERFAMILY (Trans)glycosidases 27 368 IPR017853 -
HCH10g0357 782 Pfam Glycosyl hydrolases family 18 30 364 IPR001223 GO:0005975(InterPro)
HCH10g0357 782 SUPERFAMILY Protein kinase-like (PK-like) 437 732 IPR011009 -
HCH10g0357 782 FunFam Chitotriosidase-1 269 335 - -
HCH10g0357 782 Gene3D Phosphorylase Kinase; domain 1 436 536 - -
HCH10g0357 782 CDD GH18_plant_chitinase_class_V 24 370 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0357 HCH-Chr10:2875594 HCH4g1382 HCH-Chr4:10155199 3.30E-97 dispersed
HCH8g0914 HCH-Chr8:45449728 HCH10g0357 HCH-Chr10:2875594 2.40E-48 dispersed
HCH10g0357 HCH-Chr10:2875594 HCH10g0358 HCH-Chr10:2898348 7.70E-54 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80980 PF00704 Glyco_hydro_18 7.00E-59 CL0058 HCH PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0357 - - - 0.0