Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0367 ATGACTGTGGAGGACCAAAGGAATGATTTTTTGGCTGAAAATGGGAACATGGACCGGTTCCCTGTTGGTATGCGTATTCTGGCAGTGGATGATGACCCTATTTGTCTTAAAGTCTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACGACTAATCAGGCAGTTCAGGCACTTAAAATGTTGAGGGAGAACAGAAACAAGTTTGACCTGGTTATCAGCGACGTAAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTCATCATGCTGTCTGCGCATAGTGATGTTGAACTTGTGATGAAGGGAGTTACCCATGGTGCTTGTGACTATATGCTGAAACCTGTAAGAATTGAGGAACTGAAGAACATATGGCAACATGTCCTTCGAAGGAAAAAGTCCTATGCTAAGGACCGCAATAAGTGCAGCAATGAAATCAAGGCTTGTAATCGAACTCTTGAAAGTGCAAAAGGTGTTCAATCTGTGGTTGGCGCTGATAATGGGAAACCTGATAAAAAGCGGAAAGACCAAGATGAAGATGAGGAAGGGGGTGAAGAAGATGATATTTGTGAGAATGATGACACCTCCACCCAGAAAAAGCCAAGGGTAGTTTGGTCTGGAGAGTTACACAGGAAGTTTATTTCATCTGTTAACCAGCTGGGCTATGAAAAAGCGGTTCCTAAAAAGATCCTTGATATGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCTAGCCATCTTCAGAAATACAGGCAATACCTTAAGAAAATGTGTACTAAGGAAACTCAGCAAGGTGCTATGTTGGCTGCATTTGGAGGTAAAGACACCTCCTTCATGCACATAGGTTCGCTTGATAGATTTGCAATGGCTGGATCAGGAAGGCTTTCAAATGCTACGTTCTCGTCATATCCCTCAGGAGGAATGCTTGGCCGATTAAATTCTACTGCTGGATTGAGCTTGCACGGAATCACTTCATCTGGAATGATTCAACAAGGTACTCAAAACTCAAATAGCTCTTTCAAACTCCATTCAGCTCCCTTGCCTGCAAACCAAACCACAAGCATATTCTATGGTATTTCAGCATCATCAGAAATCATCCAGCCTCATCAGGAAAAACATATTACTTCAATTAAAGAGTTTAATTCGATTGATGATGCATCCAGTTTTACAGTTTCCACCAGCTTCCCAGATGCTAGAGTAACTGTTGGTAGTTCAAGAAATTATGACATCAGTGTTTCAAGAAATCCTTTGATGTTACAAGGACATAAGCAACAGATTCATGGCAGGGGAGAATTTGGAGATCAGTCTCTAACTAACCCAGAATCTCTAGATTGTGGCATGGGCGTTTCTCATATGTTGGGCCATGGTCAGTCTAATGAAAATTGGCAGGCTTCAATCCAGTTATCTAAATTTCCTTCTAATGCCTCTGTAAGTGGAATTTACCCTCCTGATGACTTGACGATCGCTTCGGCTCAACCTGACAATAGCAACTTTCCTGTTGATTTTTCTTCAACAAGTGTGTATTCAAGTTCTCAGCTTGATTTAAGAGGGAAGGCACAATGCTATGAGAAATTAATTGGTAGTATTGCTCAAGCTATGAATGATAGACCAAGGCAACAGTGGGGTGCAGATAAGCAAGATTACCATGGCGACCTTCGTTTTAGTGTGAGAAACTCTCTGGTTTCTGGTGATAGTGTTGCAGATCCCTTGAGATGGGCAGATCAGAAAAATGCAGACTGCCTCGGGATCGGTAGCTCTTTGACTAATCAATTGAATAATGGTGCTCCAACCTTTATTCAGCACAGTGTTGACATATCGACCATGGACACTTGGATGGATTATGAGGGGAAAAATCTCATAGATCCATCAAAGTTACAAAATGGATTTACAAATAGTTATAATTCCTTGGATGATATAGCAAACGCTATGATGAAACAGGAAGAAAATCAATCAATTCGAGAGTTCGAATTTGATGCTCAATCACTCGGGTCGTGTATATGA 2037 41.24 MTVEDQRNDFLAENGNMDRFPVGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDVELVMKGVTHGACDYMLKPVRIEELKNIWQHVLRRKKSYAKDRNKCSNEIKACNRTLESAKGVQSVVGADNGKPDKKRKDQDEDEEGGEEDDICENDDTSTQKKPRVVWSGELHRKFISSVNQLGYEKAVPKKILDMMNVEGLTRENVASHLQKYRQYLKKMCTKETQQGAMLAAFGGKDTSFMHIGSLDRFAMAGSGRLSNATFSSYPSGGMLGRLNSTAGLSLHGITSSGMIQQGTQNSNSSFKLHSAPLPANQTTSIFYGISASSEIIQPHQEKHITSIKEFNSIDDASSFTVSTSFPDARVTVGSSRNYDISVSRNPLMLQGHKQQIHGRGEFGDQSLTNPESLDCGMGVSHMLGHGQSNENWQASIQLSKFPSNASVSGIYPPDDLTIASAQPDNSNFPVDFSSTSVYSSSQLDLRGKAQCYEKLIGSIAQAMNDRPRQQWGADKQDYHGDLRFSVRNSLVSGDSVADPLRWADQKNADCLGIGSSLTNQLNNGAPTFIQHSVDISTMDTWMDYEGKNLIDPSKLQNGFTNSYNSLDDIANAMMKQEENQSIREFEFDAQSLGSCI 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2965992 2969602 + evm.model.ptg000016l.793 HCH10g0367 552440

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0367 678 Gene3D - 24 194 - -
HCH10g0367 678 Gene3D - 207 270 - -
HCH10g0367 678 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
HCH10g0367 678 SUPERFAMILY Homeodomain-like 208 269 IPR009057 -
HCH10g0367 678 MobiDBLite consensus disorder prediction 170 207 - -
HCH10g0367 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 271 IPR045279 GO:0009736(InterPro)
HCH10g0367 678 CDD REC_typeB_ARR-like 26 140 - -
HCH10g0367 678 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
HCH10g0367 678 PIRSF RR_ARR_type-B 1 676 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
HCH10g0367 678 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
HCH10g0367 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
HCH10g0367 678 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
HCH10g0367 678 FunFam Two-component response regulator 207 270 - -
HCH10g0367 678 SUPERFAMILY CheY-like 23 148 IPR011006 -
HCH10g0367 678 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0367 K14491 - - csv:101203718 825.469
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0367 HCH-Chr10:2965992 HCH12g0404 HCH-Chr12:2307853 9.00E-128 dispersed
HCH8g0442 HCH-Chr8:39442405 HCH10g0367 HCH-Chr10:2965992 3.90E-54 transposed
HCH8g1021 HCH-Chr8:46223759 HCH10g0367 HCH-Chr10:2965992 2.90E-53 transposed
HCH10g0367 HCH-Chr10:2965992 HCH8g0917 HCH-Chr8:45479988 8.00E-185 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g1114 . 52 253 Response Regulator Gene Family AT3G16857 52.0 1.1e-52 204.9
HCH8g0917 . 18 421 Response Regulator Gene Family AT4G31920 52.1 1.1e-91 334.3
HCH12g0404 . 1 360 Response Regulator Gene Family AT4G31920 54.2 5.2e-89 325.5
HCH10g0367 . 17 338 Response Regulator Gene Family AT4G31920 56.8 1.0e-84 311.2
HCH6g1728 . 2 257 Response Regulator Gene Family AT4G31920 55.1 4.0e-73 272.7
HCH7g1048 . 16 293 Response Regulator Gene Family AT4G31920 51.6 9.1e-70 261.5
HCH4g0079 . 11 258 Response Regulator Gene Family AT4G31920 52.2 4.4e-64 242.7
HCH7g1048 . 99 262 Response Regulator Gene Family AT1G67710 54.4 3.0e-39 159.8
HCH12g0404 . 93 251 Response Regulator Gene Family AT1G67710 52.6 4.0e-39 159.5
HCH8g0917 . 99 269 Response Regulator Gene Family AT1G67710 51.1 7.5e-38 155.2
HCH8g0917 . 16 389 Response Regulator Gene Family AT2G25180 56.2 2.0e-99 360.1
HCH10g0367 . 17 436 Response Regulator Gene Family AT2G25180 50.6 7.3e-97 351.7
HCH4g0079 . 11 255 Response Regulator Gene Family AT2G25180 55.4 2.4e-68 256.9
HCH1g1114 . 13 267 Response Regulator Gene Family AT2G25180 53.3 3.0e-66 250.0
HCH6g1728 . 65 298 Response Regulator Gene Family AT2G01760 50.2 1.7e-52 203.4
HCH4g0079 . 72 263 Response Regulator Gene Family AT2G01760 51.2 6.7e-49 191.4
HCH1g1114 . 72 256 Response Regulator Gene Family AT2G01760 50.5 4.5e-45 178.7
HCH10g0367 . 79 275 Response Regulator Gene Family AT2G01760 51.2 2.5e-40 162.9
HCH4g0079 . 9 257 Response Regulator Gene Family AT5G58080 50.4 4.7e-62 236.1
HCH6g1728 . 3 228 Response Regulator Gene Family AT4G16110 65.4 9.9e-79 291.6
HCH7g1048 . 18 242 Response Regulator Gene Family AT4G16110 65.7 2.4e-77 287.0
HCH12g0404 . 11 229 Response Regulator Gene Family AT4G16110 58.2 3.5e-60 229.9
HCH4g0079 . 10 234 Response Regulator Gene Family AT4G16110 53.6 1.6e-57 221.1
HCH10g0367 . 16 264 Response Regulator Gene Family AT4G16110 51.7 6.2e-57 219.2
HCH8g0917 . 17 249 Response Regulator Gene Family AT4G16110 55.2 2.4e-56 217.2
HCH1g1114 . 13 232 Response Regulator Gene Family AT4G16110 51.3 2.1e-52 204.1
HCH8g1351 . 20 176 Response Regulator Gene Family AT3G48100 71.7 1.2e-55 213.0
HCH1g0993 . 29 155 Response Regulator Gene Family AT3G48100 71.5 5.6e-48 187.6
HCH9g1007 . 10 158 Response Regulator Gene Family AT3G48100 56.4 1.9e-40 162.5
HCH13g0137 . 1 161 Response Regulator Gene Family AT3G48100 50.6 7.3e-40 160.6
HCH1g0268 . 2 141 Response Regulator Gene Family AT3G48100 55.6 1.3e-39 159.8
HCH1g0631 . 11 178 Response Regulator Gene Family AT3G48100 50.6 1.3e-39 159.8
HCH10g1194 . 10 147 Response Regulator Gene Family AT3G48100 59.4 3.6e-39 158.3
HCH1g0993 . 1 174 Response Regulator Gene Family AT1G59940 61.7 9.2e-54 207.6
HCH8g1351 . 19 158 Response Regulator Gene Family AT1G59940 65.7 1.8e-49 193.4
HCH1g0631 . 9 149 Response Regulator Gene Family AT1G59940 60.3 1.2e-40 164.1
HCH10g1194 . 8 148 Response Regulator Gene Family AT1G59940 61.7 3.4e-40 162.5
HCH1g0268 . 13 140 Response Regulator Gene Family AT1G59940 63.3 2.2e-39 159.8
HCH13g0137 . 17 159 Response Regulator Gene Family AT1G59940 57.6 8.3e-39 157.9
HCH9g1007 . 11 154 Response Regulator Gene Family AT1G59940 56.9 8.3e-39 157.9
HCH1g0993 . 23 199 Response Regulator Gene Family AT1G10470 63.1 5.5e-51 198.0
HCH8g1351 . 19 175 Response Regulator Gene Family AT1G10470 63.1 6.7e-49 191.0
HCH9g1007 . 17 168 Response Regulator Gene Family AT1G10470 57.5 5.7e-40 161.4
HCH1g0631 . 11 171 Response Regulator Gene Family AT1G10470 53.4 2.8e-39 159.1
HCH1g0268 . 13 140 Response Regulator Gene Family AT1G10470 62.5 3.7e-39 158.7
HCH10g1194 . 10 148 Response Regulator Gene Family AT1G10470 60.4 8.3e-39 157.5
HCH13g0137 . 17 159 Response Regulator Gene Family AT1G10470 57.6 1.8e-38 156.4
HCH8g1351 . 20 176 Response Regulator Gene Family AT3G48100 71.7 1.2e-55 213.0
HCH1g0993 . 29 155 Response Regulator Gene Family AT3G48100 71.5 5.6e-48 187.6
HCH9g1007 . 10 158 Response Regulator Gene Family AT3G48100 56.4 1.9e-40 162.5
HCH13g0137 . 1 161 Response Regulator Gene Family AT3G48100 50.6 7.3e-40 160.6
HCH1g0268 . 2 141 Response Regulator Gene Family AT3G48100 55.6 1.3e-39 159.8
HCH1g0631 . 11 178 Response Regulator Gene Family AT3G48100 50.6 1.3e-39 159.8
HCH10g1194 . 10 147 Response Regulator Gene Family AT3G48100 59.4 3.6e-39 158.3
HCH8g1351 . 29 161 Response Regulator Gene Family AT5G62920 76.7 7.6e-53 203.8
HCH1g0993 . 15 155 Response Regulator Gene Family AT5G62920 65.8 8.2e-47 183.7
HCH9g1007 . 12 156 Response Regulator Gene Family AT5G62920 57.2 2.2e-39 159.1
HCH13g0137 . 1 157 Response Regulator Gene Family AT5G62920 53.8 3.7e-39 158.3
HCH10g1194 . 10 147 Response Regulator Gene Family AT5G62920 59.4 8.2e-39 157.1
HCH1g0268 . 13 141 Response Regulator Gene Family AT5G62920 60.5 3.1e-38 155.2
HCH1g0631 . 11 168 Response Regulator Gene Family AT5G62920 51.9 5.3e-38 154.5
HCH8g1351 . 15 176 Response Regulator Gene Family AT1G19050 66.7 5.0e-53 204.5
HCH1g0993 . 28 184 Response Regulator Gene Family AT1G19050 56.6 3.6e-43 171.8
HCH9g1007 . 11 161 Response Regulator Gene Family AT1G19050 53.0 1.6e-38 156.4
HCH1g0268 . 13 141 Response Regulator Gene Family AT1G19050 58.9 2.6e-38 155.6
HCH1g0631 . 9 171 Response Regulator Gene Family AT1G19050 51.5 3.5e-38 155.2
HCH13g0137 . 17 151 Response Regulator Gene Family AT1G19050 59.6 2.2e-37 152.5
HCH9g1007 . 8 251 Response Regulator Gene Family AT2G41310 56.6 3.4e-63 238.4
HCH10g1194 . 1 150 Response Regulator Gene Family AT2G41310 69.3 5.4e-53 204.5
HCH1g0631 . 7 153 Response Regulator Gene Family AT2G41310 67.3 1.2e-49 193.4
HCH13g0137 . 10 158 Response Regulator Gene Family AT2G41310 59.6 1.2e-44 176.8
HCH1g0993 . 25 155 Response Regulator Gene Family AT2G41310 59.6 2.8e-41 165.6
HCH1g0268 . 13 141 Response Regulator Gene Family AT2G41310 58.1 3.6e-41 165.2
HCH8g1351 . 28 158 Response Regulator Gene Family AT2G41310 59.0 3.1e-40 162.2
HCH12g0816 . 8 157 Response Regulator Gene Family AT2G41310 51.7 9.0e-40 160.6
HCH9g1007 . 8 251 Response Regulator Gene Family AT3G57040 55.9 1.6e-63 239.6
HCH10g1194 . 1 150 Response Regulator Gene Family AT3G57040 71.5 3.5e-55 211.8
HCH1g0631 . 1 153 Response Regulator Gene Family AT3G57040 70.1 5.6e-53 204.5
HCH13g0137 . 13 158 Response Regulator Gene Family AT3G57040 61.2 5.6e-45 177.9
HCH1g0993 . 25 155 Response Regulator Gene Family AT3G57040 59.4 4.5e-42 168.3
HCH1g0268 . 13 141 Response Regulator Gene Family AT3G57040 59.4 7.6e-42 167.5
HCH8g1351 . 28 186 Response Regulator Gene Family AT3G57040 53.3 1.7e-41 166.4
HCH12g0816 . 8 157 Response Regulator Gene Family AT3G57040 53.6 6.5e-41 164.5
HCH8g1351 . 26 181 Response Regulator Gene Family AT1G74890 70.7 2.6e-54 208.8
HCH1g0993 . 25 186 Response Regulator Gene Family AT1G74890 60.8 4.5e-46 181.4
HCH9g1007 . 12 164 Response Regulator Gene Family AT1G74890 55.8 1.7e-40 162.9
HCH1g0268 . 5 137 Response Regulator Gene Family AT1G74890 60.2 1.1e-39 160.2
HCH1g0631 . 9 154 Response Regulator Gene Family AT1G74890 56.2 1.1e-39 160.2
HCH10g1194 . 8 142 Response Regulator Gene Family AT1G74890 58.5 7.7e-38 154.1
HCH13g0137 . 17 151 Response Regulator Gene Family AT1G74890 58.1 8.5e-37 150.6
HCH1g0268 . 13 142 Response Regulator Gene Family AT2G40670 71.4 1.7e-48 189.1
HCH1g0993 . 26 156 Response Regulator Gene Family AT2G40670 58.4 5.0e-40 161.0
HCH8g1351 . 27 158 Response Regulator Gene Family AT2G40670 60.3 2.5e-39 158.7
HCH1g0631 . 7 152 Response Regulator Gene Family AT2G40670 55.4 4.7e-38 154.5
HCH13g0137 . 14 160 Response Regulator Gene Family AT2G40670 51.7 8.9e-37 150.2
HCH1g0268 . 4 142 Response Regulator Gene Family AT3G56380 69.9 7.7e-51 196.8
HCH1g0993 . 26 151 Response Regulator Gene Family AT3G56380 60.8 4.7e-40 161.0
HCH8g1351 . 21 153 Response Regulator Gene Family AT3G56380 62.0 6.2e-40 160.6
HCH1g0631 . 3 152 Response Regulator Gene Family AT3G56380 53.6 3.1e-39 158.3
HCH9g1007 . 13 156 Response Regulator Gene Family AT3G56380 55.2 1.5e-38 156.0
HCH13g0137 . 13 155 Response Regulator Gene Family AT3G56380 54.5 4.4e-38 154.5
HCH10g1194 . 4 149 Response Regulator Gene Family AT3G56380 53.7 3.7e-37 151.4
HCH1g1114 . 52 253 Response Regulator Gene Family AT3G16857 52.0 1.1e-52 204.9
HCH6g1728 . 3 228 Response Regulator Gene Family AT4G16110 65.4 9.9e-79 291.6
HCH7g1048 . 18 242 Response Regulator Gene Family AT4G16110 65.7 2.4e-77 287.0
HCH12g0404 . 11 229 Response Regulator Gene Family AT4G16110 58.2 3.5e-60 229.9
HCH4g0079 . 10 234 Response Regulator Gene Family AT4G16110 53.6 1.6e-57 221.1
HCH10g0367 . 16 264 Response Regulator Gene Family AT4G16110 51.7 6.2e-57 219.2
HCH8g0917 . 17 249 Response Regulator Gene Family AT4G16110 55.2 2.4e-56 217.2
HCH1g1114 . 13 232 Response Regulator Gene Family AT4G16110 51.3 2.1e-52 204.1
HCH8g0917 . 18 421 Response Regulator Gene Family AT4G31920 52.1 1.1e-91 334.3
HCH12g0404 . 1 360 Response Regulator Gene Family AT4G31920 54.2 5.2e-89 325.5
HCH10g0367 . 17 338 Response Regulator Gene Family AT4G31920 56.8 1.0e-84 311.2
HCH6g1728 . 2 257 Response Regulator Gene Family AT4G31920 55.1 4.0e-73 272.7
HCH7g1048 . 16 293 Response Regulator Gene Family AT4G31920 51.6 9.1e-70 261.5
HCH4g0079 . 11 258 Response Regulator Gene Family AT4G31920 52.2 4.4e-64 242.7
HCH7g1048 . 99 262 Response Regulator Gene Family AT1G67710 54.4 3.0e-39 159.8
HCH12g0404 . 93 251 Response Regulator Gene Family AT1G67710 52.6 4.0e-39 159.5
HCH8g0917 . 99 269 Response Regulator Gene Family AT1G67710 51.1 7.5e-38 155.2
HCH8g0917 . 16 389 Response Regulator Gene Family AT2G25180 56.2 2.0e-99 360.1
HCH10g0367 . 17 436 Response Regulator Gene Family AT2G25180 50.6 7.3e-97 351.7
HCH4g0079 . 11 255 Response Regulator Gene Family AT2G25180 55.4 2.4e-68 256.9
HCH1g1114 . 13 267 Response Regulator Gene Family AT2G25180 53.3 3.0e-66 250.0
HCH6g1728 . 65 298 Response Regulator Gene Family AT2G01760 50.2 1.7e-52 203.4
HCH4g0079 . 72 263 Response Regulator Gene Family AT2G01760 51.2 6.7e-49 191.4
HCH1g1114 . 72 256 Response Regulator Gene Family AT2G01760 50.5 4.5e-45 178.7
HCH10g0367 . 79 275 Response Regulator Gene Family AT2G01760 51.2 2.5e-40 162.9
HCH4g0079 . 9 257 Response Regulator Gene Family AT5G58080 50.4 4.7e-62 236.1
HCH9g0616 . 58 279 Response Regulator Gene Family AT5G60100 60.1 2.4e-59 226.5
HCH5g0915 . 64 224 Response Regulator Gene Family AT5G60100 55.8 1.3e-44 177.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005633 0 0 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 4 15 0 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32430 PF00072 Response_reg 3.60E-25 CL0304 HCH TF