Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0367 ATGACTGTGGAGGACCAAAGGAATGATTTTTTGGCTGAAAATGGGAACATGGACCGGTTCCCTGTTGGTATGCGTATTCTGGCAGTGGATGATGACCCTATTTGTCTTAAAGTCTTGGAGAATTTGCTTCGTAAATGTCAATATCATGTTACAACGACTAATCAGGCAGTTCAGGCACTTAAAATGTTGAGGGAGAACAGAAACAAGTTTGACCTGGTTATCAGCGACGTAAACATGCCAGACATGGATGGTTTTAAGCTCCTTGAGCTAGTAGGCCTTGAAATGGACCTACCTGTCATCATGCTGTCTGCGCATAGTGATGTTGAACTTGTGATGAAGGGAGTTACCCATGGTGCTTGTGACTATATGCTGAAACCTGTAAGAATTGAGGAACTGAAGAACATATGGCAACATGTCCTTCGAAGGAAAAAGTCCTATGCTAAGGACCGCAATAAGTGCAGCAATGAAATCAAGGCTTGTAATCGAACTCTTGAAAGTGCAAAAGGTGTTCAATCTGTGGTTGGCGCTGATAATGGGAAACCTGATAAAAAGCGGAAAGACCAAGATGAAGATGAGGAAGGGGGTGAAGAAGATGATATTTGTGAGAATGATGACACCTCCACCCAGAAAAAGCCAAGGGTAGTTTGGTCTGGAGAGTTACACAGGAAGTTTATTTCATCTGTTAACCAGCTGGGCTATGAAAAAGCGGTTCCTAAAAAGATCCTTGATATGATGAATGTTGAAGGACTTACAAGAGAAAATGTGGCTAGCCATCTTCAGAAATACAGGCAATACCTTAAGAAAATGTGTACTAAGGAAACTCAGCAAGGTGCTATGTTGGCTGCATTTGGAGGTAAAGACACCTCCTTCATGCACATAGGTTCGCTTGATAGATTTGCAATGGCTGGATCAGGAAGGCTTTCAAATGCTACGTTCTCGTCATATCCCTCAGGAGGAATGCTTGGCCGATTAAATTCTACTGCTGGATTGAGCTTGCACGGAATCACTTCATCTGGAATGATTCAACAAGGTACTCAAAACTCAAATAGCTCTTTCAAACTCCATTCAGCTCCCTTGCCTGCAAACCAAACCACAAGCATATTCTATGGTATTTCAGCATCATCAGAAATCATCCAGCCTCATCAGGAAAAACATATTACTTCAATTAAAGAGTTTAATTCGATTGATGATGCATCCAGTTTTACAGTTTCCACCAGCTTCCCAGATGCTAGAGTAACTGTTGGTAGTTCAAGAAATTATGACATCAGTGTTTCAAGAAATCCTTTGATGTTACAAGGACATAAGCAACAGATTCATGGCAGGGGAGAATTTGGAGATCAGTCTCTAACTAACCCAGAATCTCTAGATTGTGGCATGGGCGTTTCTCATATGTTGGGCCATGGTCAGTCTAATGAAAATTGGCAGGCTTCAATCCAGTTATCTAAATTTCCTTCTAATGCCTCTGTAAGTGGAATTTACCCTCCTGATGACTTGACGATCGCTTCGGCTCAACCTGACAATAGCAACTTTCCTGTTGATTTTTCTTCAACAAGTGTGTATTCAAGTTCTCAGCTTGATTTAAGAGGGAAGGCACAATGCTATGAGAAATTAATTGGTAGTATTGCTCAAGCTATGAATGATAGACCAAGGCAACAGTGGGGTGCAGATAAGCAAGATTACCATGGCGACCTTCGTTTTAGTGTGAGAAACTCTCTGGTTTCTGGTGATAGTGTTGCAGATCCCTTGAGATGGGCAGATCAGAAAAATGCAGACTGCCTCGGGATCGGTAGCTCTTTGACTAATCAATTGAATAATGGTGCTCCAACCTTTATTCAGCACAGTGTTGACATATCGACCATGGACACTTGGATGGATTATGAGGGGAAAAATCTCATAGATCCATCAAAGTTACAAAATGGATTTACAAATAGTTATAATTCCTTGGATGATATAGCAAACGCTATGATGAAACAGGAAGAAAATCAATCAATTCGAGAGTTCGAATTTGATGCTCAATCACTCGGGTCGTGTATATGA 2037 41.24 MTVEDQRNDFLAENGNMDRFPVGMRILAVDDDPICLKVLENLLRKCQYHVTTTNQAVQALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDVELVMKGVTHGACDYMLKPVRIEELKNIWQHVLRRKKSYAKDRNKCSNEIKACNRTLESAKGVQSVVGADNGKPDKKRKDQDEDEEGGEEDDICENDDTSTQKKPRVVWSGELHRKFISSVNQLGYEKAVPKKILDMMNVEGLTRENVASHLQKYRQYLKKMCTKETQQGAMLAAFGGKDTSFMHIGSLDRFAMAGSGRLSNATFSSYPSGGMLGRLNSTAGLSLHGITSSGMIQQGTQNSNSSFKLHSAPLPANQTTSIFYGISASSEIIQPHQEKHITSIKEFNSIDDASSFTVSTSFPDARVTVGSSRNYDISVSRNPLMLQGHKQQIHGRGEFGDQSLTNPESLDCGMGVSHMLGHGQSNENWQASIQLSKFPSNASVSGIYPPDDLTIASAQPDNSNFPVDFSSTSVYSSSQLDLRGKAQCYEKLIGSIAQAMNDRPRQQWGADKQDYHGDLRFSVRNSLVSGDSVADPLRWADQKNADCLGIGSSLTNQLNNGAPTFIQHSVDISTMDTWMDYEGKNLIDPSKLQNGFTNSYNSLDDIANAMMKQEENQSIREFEFDAQSLGSCI 678
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 2965992 2969602 + evm.model.ptg000016l.793 HCH10g0367 552440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0367 678 Gene3D - 24 194 - -
HCH10g0367 678 Gene3D - 207 270 - -
HCH10g0367 678 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
HCH10g0367 678 SUPERFAMILY Homeodomain-like 208 269 IPR009057 -
HCH10g0367 678 MobiDBLite consensus disorder prediction 170 207 - -
HCH10g0367 678 PANTHER TWO-COMPONENT RESPONSE REGULATOR 21 271 IPR045279 GO:0009736(InterPro)
HCH10g0367 678 CDD REC_typeB_ARR-like 26 140 - -
HCH10g0367 678 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160(InterPro)
HCH10g0367 678 PIRSF RR_ARR_type-B 1 676 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
HCH10g0367 678 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160(InterPro)
HCH10g0367 678 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
HCH10g0367 678 NCBIfam myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677(InterPro)
HCH10g0367 678 FunFam Two-component response regulator 207 270 - -
HCH10g0367 678 SUPERFAMILY CheY-like 23 148 IPR011006 -
HCH10g0367 678 SMART REC_2 24 136 IPR001789 GO:0000160(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0367 HCH-Chr10:2965992 HCH12g0404 HCH-Chr12:2307853 9.00E-128 dispersed
HCH8g0442 HCH-Chr8:39442405 HCH10g0367 HCH-Chr10:2965992 3.90E-54 transposed
HCH8g1021 HCH-Chr8:46223759 HCH10g0367 HCH-Chr10:2965992 2.90E-53 transposed
HCH10g0367 HCH-Chr10:2965992 HCH8g0917 HCH-Chr8:45479988 8.00E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32430 PF00072 Response_reg 3.60E-25 CL0304 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0367 K14491 - csv:101203718 825.469