Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| HCH10g0387 | ATGTCCAACCCTTCTAATGGAGATGAAGAATCCATTATCACTCCCTTACTCCCTGCTCAAAGAGCATTCGCCAATTCCTTCTCACAAGTTGCCATTGTTGGTGCTAATGTTTGCCCTGTTGAGAGTCTTGATTATGAGATTTTTGACAATGAGCTTTTAATGAAAGATTGGAGGAGTAGAGAGAATCTTGAGATGATCCATTACTTACTTATGAAGTGGCTTTCTTGCTTTTTGATTGGTCTGATTATGGGCCTTGTTGGATTTTTCAACAATCTCGCGGTTGAGAACATTGCAGGCAAGAAGTTTGTGGTCACTTCCAATATGATGCTTGAGAGTAGGTTTGCGATGGCTTTTCTTGTTTTCTCTGTCTCCAATTTAGTGCTCACATTGTTCGCATCTGTCATCACGGCATGCATCTCTCCGGCAGCGGCTGGCTCAGGTATACCAGAAGTAAAAGCTTACCTGAATGGTGTGGATGCCCCTGGAATATTCACTCTCCCAACCTTGTTAGTTAAGATTATCGGTAGCATTTCTGTAGTGTCGTCGTCATTGGTTGTTGGTAAAGCTGGGCCCATGATACATACAGGGGCATGTATTGCATCCTTGGTAGGTCAGGGTGGTTTGAAGAGATTTGGTTTAACGTGGAGATGGCTATGCCATTTCAATAATGACCGAGATCGGCGGGATCTTGTTACATGTGGATCAGCTGCTGGAATAGCTGCTGCTTTTCGTGCTCCTGTCAGTGGTGTGCTGTTTGCACTCGAAGAGATGGCATCTTGGTGGAGAAGTGCCCTTATGTGGCGATCGTTTTTCACAACAGCTATAGTTGCCGTGGTATTACGTGCTCTGATTGATGTTTGCTTAAGTGGATTATGTGGATTATTTGGTAAAGGAGGGCTCATTATATTTGATTCCTACTCAGAATTTTCTACATATCACCTAGAAGATCTACCTCCTGTGCTTGTCCTTGCGTTCATAGGGGGCATACTTGGAAGCTTATATAATTTTCTTTTAGAAAAAGTTCTCCGCGTATACAATCTCATACACGAGAAAGGCATTGTTTACAAAATTTTACTGGCTTGCTCTGTCTCAATTTTCACATCCTGTCTTCTTTTTGGATTACCGTGGTTTGCGTCTTGCCAACCTTGCCCATCTAGTGCACTAGAAGCTTGTCCTACAATAGGCCGATCTGGTAACTTCAAGAAGTTTCAGTGTGCTCCTGGTCACTATAATGATCTTGCAAGTCTCATATTTAACACCATTGATGACGCCATTAAAAATCTCTTTAGCAAGAACACAGACACTGAGTTCCAATTCTCATCAATGCTCATATTTTTCATTACCTGTTTTTCCTTAAGTATCCTCAGTTATGGGACTGTCACTCCTGCTGGTCTATTTGTCCCTGTTATTGTGACTGGAGCTTCTTATGGACGTTTTATTGGAATGGTTGTCGGTCCATACACAAACCTCAACCATGGCCTCTTTGCCATATTGGGTGCAGCATCCTTTCTTGGAGGATCAATGAGGACAACTGTTTCTCTCTGTGTTATTATCCTAGAATTGACCAATAATTTGTTACTGCTTCCTTTAATAATGCTAGTTCTCCTTATCTCCAAAACTGTAGCTGATGCTTTTAACAGTAATATTTATAACCTGATCATGAAAGCAAAGGGATTTCCTTATCTAGAAGCCCACACTGAGACATATATGAGGCAGCTGACTGTGGCTGATGCGTTAATAGGTCCACTTCAACTATTTCACGGCATTGAAAAGGTTTGCAATGTAGTAAATGTTCTCAAAAACACGAGTCATCACGGATTCCCTATCATCGACGAGCCTCCTTTCTCTGAATCCCCTGTTTTATTTGGCACAATACTCAGAGCGCATCTTATCAAGTTGTTGAAGAAGAAAGCTTTCTCATCCACTCCGGCACCAATAGGCAATGAAGCCATTAAGCTATTCTCAGCTGATTATTTTGCAAAGACGGATACGGGCAATGTTGATAGGATAGAAGATGTCCAATTGACTGAGGAAGAGATGGAGATGTTCATAGATCTACATCCATTTGCTAATACTTCACCTTACACTGTCCTGGAGACAATGTCATTAGCAAAGGCTCTTGAACTTTTTCGAGAAACTGGTTTAAGACACATGCTGGTGATACCCAAGATATCAGGAAGATCACCTGTGGTCGGTATATTAACAAGGCACGATTTCATGTCGGATTACATTCTGAGTTTGCATCCATTGTTAGAGAAGAACAGGTGGAAAAGGTTAAGAATCAATTTTTCCTTTAAGAAAAAGTTCTTCTAG | 2313 | 41.42 | MSNPSNGDEESIITPLLPAQRAFANSFSQVAIVGANVCPVESLDYEIFDNELLMKDWRSRENLEMIHYLLMKWLSCFLIGLIMGLVGFFNNLAVENIAGKKFVVTSNMMLESRFAMAFLVFSVSNLVLTLFASVITACISPAAAGSGIPEVKAYLNGVDAPGIFTLPTLLVKIIGSISVVSSSLVVGKAGPMIHTGACIASLVGQGGLKRFGLTWRWLCHFNNDRDRRDLVTCGSAAGIAAAFRAPVSGVLFALEEMASWWRSALMWRSFFTTAIVAVVLRALIDVCLSGLCGLFGKGGLIIFDSYSEFSTYHLEDLPPVLVLAFIGGILGSLYNFLLEKVLRVYNLIHEKGIVYKILLACSVSIFTSCLLFGLPWFASCQPCPSSALEACPTIGRSGNFKKFQCAPGHYNDLASLIFNTIDDAIKNLFSKNTDTEFQFSSMLIFFITCFSLSILSYGTVTPAGLFVPVIVTGASYGRFIGMVVGPYTNLNHGLFAILGAASFLGGSMRTTVSLCVIILELTNNLLLLPLIMLVLLISKTVADAFNSNIYNLIMKAKGFPYLEAHTETYMRQLTVADALIGPLQLFHGIEKVCNVVNVLKNTSHHGFPIIDEPPFSESPVLFGTILRAHLIKLLKKKAFSSTPAPIGNEAIKLFSADYFAKTDTGNVDRIEDVQLTEEEMEMFIDLHPFANTSPYTVLETMSLAKALELFRETGLRHMLVIPKISGRSPVVGILTRHDFMSDYILSLHPLLEKNRWKRLRINFSFKKKFF | 770 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 3092639 | 3096730 | + | evm.model.ptg000016l.773 | HCH10g0387 | 552460 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| HCH10g0387 | 770 | PRINTS | Plant CLC chloride channel signature | 289 | 296 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Plant CLC chloride channel signature | 257 | 265 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Plant CLC chloride channel signature | 413 | 429 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Plant CLC chloride channel signature | 271 | 281 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| HCH10g0387 | 770 | Pfam | CBS domain | 691 | 741 | IPR000644 | - | |
| HCH10g0387 | 770 | SUPERFAMILY | Clc chloride channel | 50 | 565 | IPR014743 | - | |
| HCH10g0387 | 770 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 26 | 741 | IPR051280 | GO:0009705(PANTHER)|GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| HCH10g0387 | 770 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 574 | 740 | - | - | |
| HCH10g0387 | 770 | Gene3D | - | 563 | 742 | IPR046342 | - | |
| HCH10g0387 | 770 | FunFam | Chloride channel ClC3 | 64 | 382 | - | - | |
| HCH10g0387 | 770 | Pfam | Voltage gated chloride channel | 129 | 543 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Chloride channel signature | 236 | 255 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Chloride channel signature | 511 | 530 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Chloride channel signature | 549 | 563 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Chloride channel signature | 141 | 158 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Chloride channel signature | 461 | 481 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Chloride channel signature | 172 | 191 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH10g0387 | 770 | PRINTS | Chloride channel signature | 493 | 509 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| HCH10g0387 | 770 | SMART | cbs_1 | 582 | 635 | IPR000644 | - | |
| HCH10g0387 | 770 | SMART | cbs_1 | 693 | 744 | IPR000644 | - | |
| HCH10g0387 | 770 | ProSiteProfiles | CBS domain profile. | 690 | 750 | IPR000644 | - | |
| HCH10g0387 | 770 | Gene3D | Clc chloride channel | 64 | 562 | - | - | |
| HCH10g0387 | 770 | SUPERFAMILY | CBS-domain pair | 566 | 741 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| HCH10g0387 | HCH-Chr10:3092639 | HCH11g0802 | HCH-Chr11:38434645 | 1.80E-257 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| HCH10g0387 | K05016 | - | csv:101216071 | 1234.17 |