Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0406 ATGTCTAGCTGCATCAACAGTGCACAGGAGCAGCTCTGCTATATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAACAACCTTTTCGACATTGTGACAGTCCGATGTGGGCACTGCAGCAATCTGTGGTCCGTGAATATGGCTGCTGCCTTTCAATCTCTCTCTTGGCCTAATTCCCATTCTCAGGCAACAACGACCCACAGCCACAGTAGCAATGCATCTGATTACAGGGTTGAAATGGCCGGTTCATCATCAAAATGCAACAATAAGATGAAAATGAGAGCACCAACTAAAAACCCTACAACTGATGATCATAGGGTTAACAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAACCAGTTCATAAAAGAGGAAATCCAGAGGATCAAGGCAAATAATCCAGATATTACCCACAGGGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCACACTTCCCACATATTCATTTTGGGCTGATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGCTTCTGAGAAGCATCTCATGCCAGTGCCAAGGCTGCACTACTGA 585 45.81 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWPNSHSQATTTHSHSSNASDYRVEMAGSSSKCNNKMKMRAPTKNPTTDDHRVNNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSAAAKNWAHFPHIHFGLMLETNNLQTKNDASEKHLMPVPRLHY 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3243254 3246599 + evm.model.ptg000016l.754 HCH10g0406 552479

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0406 194 MobiDBLite consensus disorder prediction 88 123 - -
HCH10g0406 194 Pfam YABBY protein 8 168 IPR006780 GO:0007275(InterPro)
HCH10g0406 194 PANTHER PROTEIN YABBY 6-RELATED 8 179 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
HCH10g0406 194 FunFam axial regulator YABBY 5-like 106 164 - -
HCH10g0406 194 CDD HMG-box_SF 122 158 - -
HCH10g0406 194 MobiDBLite consensus disorder prediction 102 118 - -
HCH10g0406 194 SUPERFAMILY HMG-box 111 161 IPR036910 -
HCH10g0406 194 Gene3D High mobility group box domain 89 163 IPR036910 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0406 K25796 - - csv:101219877 328.176
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0406 HCH-Chr10:3243254 HCH5g0398 HCH-Chr5:2620127 1.30E-39 dispersed
HCH13g1189 HCH-Chr13:38971261 HCH10g0406 HCH-Chr10:3243254 1.70E-06 transposed
HCH1g0866 HCH-Chr1:57206451 HCH10g0406 HCH-Chr10:3243254 3.30E-32 transposed
HCH2g1305 HCH-Chr2:55147352 HCH10g0406 HCH-Chr10:3243254 6.80E-48 transposed
HCH5g1220 HCH-Chr5:42779560 HCH10g0406 HCH-Chr10:3243254 1.70E-06 transposed
HCH10g0406 HCH-Chr10:3243254 HCH8g0848 HCH-Chr8:44945370 1.70E-63 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
HCH1g0866 . 1 171 C2C2-YABBY Transcription Factor Family AT1G69180 57.1 5.5e-48 187.6
HCH5g0398 . 73 230 C2C2-YABBY Transcription Factor Family AT2G45190 62.0 9.5e-47 183.3
HCH2g1305 . 1 169 C2C2-YABBY Transcription Factor Family AT1G08465 65.7 1.7e-52 202.6
HCH10g0406 . 5 182 C2C2-YABBY Transcription Factor Family AT1G08465 50.8 1.2e-42 169.9
HCH5g0398 . 30 220 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 2.1e-42 169.1
HCH6g0989 . 18 198 C2C2-YABBY Transcription Factor Family AT1G08465 52.4 1.3e-41 166.4
HCH8g0848 . 5 172 C2C2-YABBY Transcription Factor Family AT1G08465 53.2 1.3e-41 166.4
HCH5g0398 . 40 229 C2C2-YABBY Transcription Factor Family AT4G00180 55.5 7.3e-52 200.7
HCH6g0989 . 28 219 C2C2-YABBY Transcription Factor Family AT4G00180 51.2 1.8e-42 169.5
HCH1g1044 . 1 170 C2C2-YABBY Transcription Factor Family AT1G23420 56.0 6.8e-39 157.9
HCH4g0030 . 2 181 C2C2-YABBY Transcription Factor Family AT1G23420 51.1 2.8e-37 152.5
HCH10g0406 . 8 173 C2C2-YABBY Transcription Factor Family AT2G26580 70.5 1.1e-60 229.6
HCH8g0848 . 7 172 C2C2-YABBY Transcription Factor Family AT2G26580 72.9 4.8e-59 224.2
HCH2g1305 . 1 170 C2C2-YABBY Transcription Factor Family AT2G26580 58.5 1.7e-48 189.1
HCH5g0398 . 30 194 C2C2-YABBY Transcription Factor Family AT2G26580 55.1 1.5e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001272 2 2 3 3 3 2 4 2 2 2 2 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 7 3 1 76
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32432 PF04690 YABBY 4.40E-71 CL0114 HCH TF