Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
HCH10g0406 ATGTCTAGCTGCATCAACAGTGCACAGGAGCAGCTCTGCTATATCCCCTGCAACTTTTGCAATATTGTTCTTGCGGTGAGTGTTCCATGCAACAACCTTTTCGACATTGTGACAGTCCGATGTGGGCACTGCAGCAATCTGTGGTCCGTGAATATGGCTGCTGCCTTTCAATCTCTCTCTTGGCCTAATTCCCATTCTCAGGCAACAACGACCCACAGCCACAGTAGCAATGCATCTGATTACAGGGTTGAAATGGCCGGTTCATCATCAAAATGCAACAATAAGATGAAAATGAGAGCACCAACTAAAAACCCTACAACTGATGATCATAGGGTTAACAACCGACCTCCCGAGAAGAGGCAGAGAGTACCTTCTGCATATAACCAGTTCATAAAAGAGGAAATCCAGAGGATCAAGGCAAATAATCCAGATATTACCCACAGGGAAGCTTTCAGTGCTGCTGCCAAAAATTGGGCACACTTCCCACATATTCATTTTGGGCTGATGCTGGAAACCAACAATCTGCAGACTAAGAATGATGCTTCTGAGAAGCATCTCATGCCAGTGCCAAGGCTGCACTACTGA 585 45.81 MSSCINSAQEQLCYIPCNFCNIVLAVSVPCNNLFDIVTVRCGHCSNLWSVNMAAAFQSLSWPNSHSQATTTHSHSSNASDYRVEMAGSSSKCNNKMKMRAPTKNPTTDDHRVNNRPPEKRQRVPSAYNQFIKEEIQRIKANNPDITHREAFSAAAKNWAHFPHIHFGLMLETNNLQTKNDASEKHLMPVPRLHY 194
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 3243254 3246599 + evm.model.ptg000016l.754 HCH10g0406 552479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
HCH10g0406 194 MobiDBLite consensus disorder prediction 88 123 - -
HCH10g0406 194 Pfam YABBY protein 8 168 IPR006780 GO:0007275(InterPro)
HCH10g0406 194 PANTHER PROTEIN YABBY 6-RELATED 8 179 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0045165(PANTHER)
HCH10g0406 194 FunFam axial regulator YABBY 5-like 106 164 - -
HCH10g0406 194 CDD HMG-box_SF 122 158 - -
HCH10g0406 194 MobiDBLite consensus disorder prediction 102 118 - -
HCH10g0406 194 SUPERFAMILY HMG-box 111 161 IPR036910 -
HCH10g0406 194 Gene3D High mobility group box domain 89 163 IPR036910 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
HCH10g0406 HCH-Chr10:3243254 HCH5g0398 HCH-Chr5:2620127 1.30E-39 dispersed
HCH13g1189 HCH-Chr13:38971261 HCH10g0406 HCH-Chr10:3243254 1.70E-06 transposed
HCH1g0866 HCH-Chr1:57206451 HCH10g0406 HCH-Chr10:3243254 3.30E-32 transposed
HCH2g1305 HCH-Chr2:55147352 HCH10g0406 HCH-Chr10:3243254 6.80E-48 transposed
HCH5g1220 HCH-Chr5:42779560 HCH10g0406 HCH-Chr10:3243254 1.70E-06 transposed
HCH10g0406 HCH-Chr10:3243254 HCH8g0848 HCH-Chr8:44945370 1.70E-63 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
32432 PF04690 YABBY 4.40E-71 CL0114 HCH TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
HCH10g0406 K25796 - csv:101219877 328.176